Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2109 CAAGTGGGGGGAATCAAATGGGTGAAATTTTTCTCTCTTTTGGTCTTTTTTCTCACTCTATTATGGTACATTTCTTTAAAGAGAAACAAGACGGCTGCCATTAGAGATGGAGCTCAGCAGCTCCCTCCTGGTTCTTTAGGTTGGCCTTATATTGGAGAAACTCTTCAACTCTATTCTCAACACCCCGATTTTTTCTTCGCCTCCAAACAGAAAAGGTATGGAGAGATTTTTAAGACGCATATACTTGGATGTCCTTGTGTGATGTTGGCTAGCCCGGAGGCGGCGAGGTTCGTGCTGACACAGGCTCATTTGTTTAAGCCAACTTACCCCAAGAGCAAAGAGGGTTTGATTGGCCCATCTGCCCTGTTTTTTCACCAAGGTGACTATCATAGCCGGCTGAGGAAGCTGGTTCAGAACTCTCTTTCTTTGGACGCCCTCCGGAGCTTGGTGCCCGATATCGACTCCGCCGCCTCCTCCGCCCTCGACTCTTGGGCTGGTGGCCACCTCATTAACACCTTTCCTGAAATGAAAAAGATATCCTTTGAAGTTGGGATATTGGCCATTTTTGGCCATTTGGAGGCTGCTTACAAAGAGAACCTCAAAAACAACTACACCATAGTGGACGCAGGCTACAATTCTTTTCCCACCAGCATTCCCGGAACTCCATACAAAAAAGCACTCTCAGCAAGAAAGAGGCTAAGTAAAATCTTAGGTGACATAATCCATGAGAGGAGGGAGAAAAGTGTGGCTGAGAAGGATCTATTGGGGTGCTTTCTGAACTCCATTGATGAAGAAGGTGAAGCTATAAGCGATTCTCAAATAGCAGATAACATAATAGGAGTGCTTTTTGCGGCTCAAGACACCACAGCCAGTGTCATGACTTGGATCGTTAAGTACCTTCATGATCAACCCAAGCTTCTTCAGGCTGTTAAGGCAGAGCAAGAGGGAATTCTTAAACTGAATTGTGAGAATAATCAACAGTTGAACTGGGATCAGACAAGAAAGATGCCCATCAGTTACAAGGTGGTATTGGAGAGCTTGAGGATGGCCAGCATTATATCGTTCACTTACAGAGAGGCTGTAGCTGATGTGGAATACAAAGGATACTTGATTCCAAAAGGTTGGAAAGTGATGCCTTTGTTCCGAAACATCCATCACAGTCCAGAATATTTTGCCGATCCTCACAAATTTGACCCTTCTAGATTCGAGGTTGCACCAAAACCCAATACATTTATGCCATTTGGCAGTGGAGTTCATGCCTGCCCAGGAAATGAACTTGCCAAACTGGAGATTTTGATCATGATTCATCATCTAGTCACCAAGTTCAGGTGGGAATTGGTTGGTGCGCAAAACGGGGTTCAGCATAGTCCTTTTCCCGTTCCCTTTCAAGGCCTTCCAGCCAGATTTTGGAAGATAGCCCACCAGTAG 1428 45.31 QVGGIKWVKFFSLLVFFLTLLWYISLKRNKTAAIRDGAQQLPPGSLGWPYIGETLQLYSQHPDFFFASKQKRYGEIFKTHILGCPCVMLASPEAARFVLTQAHLFKPTYPKSKEGLIGPSALFFHQGDYHSRLRKLVQNSLSLDALRSLVPDIDSAASSALDSWAGGHLINTFPEMKKISFEVGILAIFGHLEAAYKENLKNNYTIVDAGYNSFPTSIPGTPYKKALSARKRLSKILGDIIHERREKSVAEKDLLGCFLNSIDEEGEAISDSQIADNIIGVLFAAQDTTASVMTWIVKYLHDQPKLLQAVKAEQEGILKLNCENNQQLNWDQTRKMPISYKVVLESLRMASIISFTYREAVADVEYKGYLIPKGWKVMPLFRNIHHSPEYFADPHKFDPSRFEVAPKPNTFMPFGSGVHACPGNELAKLEILIMIHHLVTKFRWELVGAQNGVQHSPFPVPFQGLPARFWKIAHQ 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45787319 45790509 + Maker00016544 Lcy9g2109 643225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2109 475 Pfam Cytochrome P450 42 447 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 FunFam Abscisic acid 8 31 471 - -
Lcy9g2109 475 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 PRINTS E-class P450 group I signature 421 444 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 PRINTS E-class P450 group I signature 380 404 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 PRINTS E-class P450 group I signature 293 319 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 PRINTS E-class P450 group I signature 411 421 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 PRINTS E-class P450 group I signature 273 290 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 SUPERFAMILY Cytochrome P450 40 470 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 414 423 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy9g2109 475 Gene3D Cytochrome P450 31 472 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 CDD CYP90-like 70 468 - -
Lcy9g2109 475 PANTHER CYTOCHROME P450 26 40 449 - GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Lcy9g2109 475 PRINTS P450 superfamily signature 421 432 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 PRINTS P450 superfamily signature 412 421 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 PRINTS P450 superfamily signature 284 301 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g2109 475 PRINTS P450 superfamily signature 341 352 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1968 Lcy-Chr6:41800985 Lcy9g2109 Lcy-Chr9:45787319 1.39E-67 dispersed
Lcy7g0979 Lcy-Chr7:10142468 Lcy9g2109 Lcy-Chr9:45787319 5.74E-83 dispersed
Lcy9g0964 Lcy-Chr9:32320550 Lcy9g2109 Lcy-Chr9:45787319 3.62E-84 dispersed
Lcy9g1199 Lcy-Chr9:36382889 Lcy9g2109 Lcy-Chr9:45787319 1.85E-64 dispersed
Lcy9g1200 Lcy-Chr9:36391200 Lcy9g2109 Lcy-Chr9:45787319 1.00E-48 dispersed
Lcy9g2109 Lcy-Chr9:45787319 Lcy8g0864 Lcy-Chr8:31169750 2.25E-14 dispersed
Lcy3g1118 Lcy-Chr3:36138000 Lcy9g2109 Lcy-Chr9:45787319 2.13E-219 transposed
Lcy6g0748 Lcy-Chr6:7341124 Lcy9g2109 Lcy-Chr9:45787319 1.43E-187 transposed
Lcy13g2072 Lcy-Chr13:39626229 Lcy9g2109 Lcy-Chr9:45787319 1.24E-226 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2109 K09843 - csv:101213916 818.92