Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2120 ATGTCCACGAGGAGTGATCATCATCATACAGTCCCGCTCTCCGTGCTCCTGAAGCGTGAATTGGCGATTGAGAAGATTGAGAGACCAGAAATCATACATGGTCAGGCAAGTCAGAGTAAGAAAGGGGAGGATTTTACATTGCTAAAGACGGAATGCGAGAGAGTGGTCGGAGATGGAGTCTCTACATATTCGGTTTTTGGGCTTTTTGATGGACATAATGGATCTGCCGCTGCTATTTATGCTAAGGAGAATCTGTTGAACAACGTTTTAGCTGCTATTCCATCAGATCTCAACAGAGATGAATGGATTGCAGCATTACCAAGGGCCTTGGTTGCAGGTTTTGTGAAGACGGACAAAGATTTTCAAGAGAAAGTGCCCTGCCCCAGAAGTTACAATTCTGATATTGACATTTTAAAAGCTTATGATGTTGACGTGTTGCTATTGGTTGTTATTTCAGCACAAACATCAGGAACCACCGTCACCTTCATGATCATTGAGGGATGGGTTGTCACTGTTGCTTCTGTTGGTGATTCCCGTTGCACTTTAGAATCAGCTGAAGGTGGCATCTACTACTTATCAGCAGATCATAGACTAGAATGCAACGAAGAAGAGAGAGAACGTATAATTGCCAGTGGTGGTGAGGTGGGCCGTCTGAATACTGGTGGTGGTGCAGAGATTGGTCCATTGAGATGCTGGCCCGGTGGCTTGTGTCTATCACGGTCGATTGGTGATATGGATGTTGGCGAGTATATAGTGCCTGTTCCCTACGTGAAGCAAGTTAAGCTATCTTCTACTGGTGGTAGGGTTATTTTGTCAAGTGATGGTGTTTGGGATGCTTTATCTGCTGAAACTGCCTTTGACTGTTGCCGGGGGATGCCAGCAGAAACTGCTGCTGCCCAGATTGTAAAAGAAGCAGTACAGTCAAAGGGACTTCGAGATGATACAACATGTATCGTGATTGACATATATCCAAGGGAGAAACCATCCACTGCTTTGCCGCCACCAAAGAAGCAGGGAAAAGGAATGTTTAAATCAATGTTCCGCAAAAAACCTTCTGAATCATCTTCTCAATTTGAGAGGGAATATAATGAGCCAGATGTTGTTGAGGAATTATTTGAGGAAGGATCGGCTATGCTGTCAGAAAGGTTAGATTCCAAGTATCCTGTCTGCAACATGTTTAAGCTGTTTGTATGTGCAGTATGCCAAATTGAGATCCAACCTCGAGAGGGTATTTCCATATATGCCGGCTCCTCTAACAGAGGGAAATTACGTGCCTGGGATGGGCCTTTTCTATGCTTAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGACCGTCTGGAGGCAGGAGATGCCAGTTAGAGTTGATTGCTTTTGGATACTGTTTTCTGACATCGGTTTATGATGACATGCTTGCCTCATATCTCGGTGGAAAGCTTTGGATAAAGTCGCCTGTATATGACACTGAAGAGTGA 1479 44.49 MSTRSDHHHTVPLSVLLKRELAIEKIERPEIIHGQASQSKKGEDFTLLKTECERVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLAAIPSDLNRDEWIAALPRALVAGFVKTDKDFQEKVPCPRSYNSDIDILKAYDVDVLLLVVISAQTSGTTVTFMIIEGWVVTVASVGDSRCTLESAEGGIYYLSADHRLECNEEERERIIASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPYVKQVKLSSTGGRVILSSDGVWDALSAETAFDCCRGMPAETAAAQIVKEAVQSKGLRDDTTCIVIDIYPREKPSTALPPPKKQGKGMFKSMFRKKPSESSSQFEREYNEPDVVEELFEEGSAMLSERLDSKYPVCNMFKLFVCAVCQIEIQPREGISIYAGSSNRGKLRAWDGPFLCLSCQEKKEAMEGKRPSGGRRCQLELIAFGYCFLTSVYDDMLASYLGGKLWIKSPVYDTEE 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45855010 45859737 - Maker00016884 Lcy9g2120 643236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2120 492 SUPERFAMILY PP2C-like 39 322 IPR036457 -
Lcy9g2120 492 CDD PP2Cc 40 322 IPR001932 -
Lcy9g2120 492 FunFam probable protein phosphatase 2C 12 33 328 - -
Lcy9g2120 492 Gene3D - 33 330 IPR036457 -
Lcy9g2120 492 SMART PP2C_4 18 320 IPR001932 -
Lcy9g2120 492 ProSiteProfiles PPM-type phosphatase domain profile. 32 322 IPR001932 -
Lcy9g2120 492 PANTHER PROTEIN PHOSPHATASE 33 321 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy9g2120 492 Pfam Protein phosphatase 2C 55 307 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0489 Lcy-Chr7:4348030 Lcy9g2120 Lcy-Chr9:45855010 1.50E-155 dispersed
Lcy9g2120 Lcy-Chr9:45855010 Lcy9g2338 Lcy-Chr9:47748218 1.98E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2120 - - - 0.0