Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g2146 | ATGGCGATTGTTAATGATCCCCTCGGCTCCATGCAGCATCTCGCCGATGCCCTTCAGGCTCCGCCGTATGCGGCCGCCGCCGTTCTGGGTGGCGTCTCTTTGTTGGTTTCGATGTTTCTCCTCGGCGATTGGAGGAAGAGACGCCGGAATCTTCTCCCTCCGGTGCCGGCGATTCCGGGAGTGCCGGTGCTGGGGAACTTGTTGCAGTTGAAGGAGAAGAAGCCTCACAAGACGTTTGCTCAGTGGGCCGAGACGTACGGTCCGGTTTATTCTATAAGAACCGGCGCTTCCACTGTGGTTGTTCTCAACACCGCCGAGGTCGCCAAAGAGGCTTTGGTGACGAGATATTCGTCCATGTCCAGTAGAAAGCTAAGCAAAGCCCTCACCATTTTGACTGCTGATAAATGCATGGTTGCTATGAGCGATTACAATGACTTTCACAAGTTGGCGAAGAGATATATATTGGCTAATCTCTTGGGTGTTAATGCTCAGAAGAGACTCAGACAAAGGAGAGACACCATGATGGAGAATATTTGTAGCCAGTTGTTTGCTCAGGTGAAGGATTCTCCTTCAGAATTTGTTAATTTTCGGAAGATCTTCGAAGCCGAACTCTTTCGGCTGGCACTTAAAGAAACATTTGGGAAGGATATTGAGTCGTTATATGTCGATGGACTCGGTACGACGTTGCCTAGAGAAGATCTGTTCAAGGTTTTAGTGATTGATCCGATGGAGGGTGCGATCGAGGTTGATTGGAGGGATTTCTTTCCATATCTGAGATGGATTCCCAACAAGGGTTTGGAGAATAAAATCAAGCAGATGGATTTTCGCCGGCGAATGACAATGAAGAGCCTGATCGAGGATCAGAAGAAGCGAATTGCAGCAGGGGAGGAAACGAATTGCTATGCTGATTTCTTGTTATCTGAAGCAAAAACGCTTACAGAGGATCAGATATCTATGTTGCTTTGGGAGACAATCATTGAAACATCAGATACTACTCTGGTTGACTATCTATATCAGCATATACAGAGTGTATGTGGGTCCACAAAGCTTACTGAAGATAACCTGTCGCAACTTCCATATCTGACTGCTGTTTTTCATGAAACTCTTCGAAAGCACAGTCCTGTCCCGATCGTCCCATTGCGATATGCGCATGAAGATACTCAGCTAGGAGGGTTCTTTGTTCCTGCAGGGAGTGAGATCGCCGTGAACATTTACGCGTGCAACATGGACAAGCAACACTGGGAAAGCCCTGAAGAATGGATGCCAGAGAGGTTTCTTGATGAGAAATCTGATCCAATGGATCTGCACAAAACCATGGCCTTTGGAGGAGGGAAGAGGGTGTGTGCAGGTGCTCTCAAGGCAATGCTGATATCTTGCACAACCATTGGAAAGCTGGTTCAGGAGTTCGAGTGGAAGCTGAGGGAAGGAGAAGAAGACAAGGTGGACACTCTCGGCCTCACTGCTCGCAAGCTCCAACCACTGCACGCCATCGTAAAGCCGAGAACCTAG | 1509 | 48.31 | MAIVNDPLGSMQHLADALQAPPYAAAAVLGGVSLLVSMFLLGDWRKRRRNLLPPVPAIPGVPVLGNLLQLKEKKPHKTFAQWAETYGPVYSIRTGASTVVVLNTAEVAKEALVTRYSSMSSRKLSKALTILTADKCMVAMSDYNDFHKLAKRYILANLLGVNAQKRLRQRRDTMMENICSQLFAQVKDSPSEFVNFRKIFEAELFRLALKETFGKDIESLYVDGLGTTLPREDLFKVLVIDPMEGAIEVDWRDFFPYLRWIPNKGLENKIKQMDFRRRMTMKSLIEDQKKRIAAGEETNCYADFLLSEAKTLTEDQISMLLWETIIETSDTTLVDYLYQHIQSVCGSTKLTEDNLSQLPYLTAVFHETLRKHSPVPIVPLRYAHEDTQLGGFFVPAGSEIAVNIYACNMDKQHWESPEEWMPERFLDEKSDPMDLHKTMAFGGGKRVCAGALKAMLISCTTIGKLVQEFEWKLREGEEDKVDTLGLTARKLQPLHAIVKPRT | 502 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 46082777 | 46085375 | - | Maker00007135 | Lcy9g2146 | 643262 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g2146 | 502 | CDD | CYP77_89 | 85 | 495 | - | - | |
| Lcy9g2146 | 502 | PRINTS | E-class P450 group I signature | 448 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2146 | 502 | PRINTS | E-class P450 group I signature | 362 | 380 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2146 | 502 | PRINTS | E-class P450 group I signature | 107 | 128 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2146 | 502 | PRINTS | E-class P450 group I signature | 83 | 102 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2146 | 502 | PRINTS | E-class P450 group I signature | 403 | 427 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2146 | 502 | PRINTS | E-class P450 group I signature | 438 | 448 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2146 | 502 | Gene3D | Cytochrome P450 | 40 | 497 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2146 | 502 | SUPERFAMILY | Cytochrome P450 | 53 | 501 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2146 | 502 | PANTHER | ENT-KAURENE OXIDASE, CHLOROPLASTIC | 24 | 502 | IPR044225 | GO:0005506(InterPro)|GO:0005783(PANTHER)|GO:0009686(InterPro)|GO:0009686(PANTHER)|GO:0009707(PANTHER)|GO:0010241(InterPro)|GO:0010241(PANTHER)|GO:0016709(PANTHER)|GO:0020037(InterPro)|GO:0052615(InterPro) | |
| Lcy9g2146 | 502 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 441 | 450 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy9g2146 | 502 | Pfam | Cytochrome P450 | 336 | 481 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2146 | 502 | Pfam | Cytochrome P450 | 59 | 332 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy9g2146 | Lcy-Chr9:46082777 | Lcy5g0828 | Lcy-Chr5:13116027 | 3.89E-49 | dispersed | |
| Lcy12g1493 | Lcy-Chr12:34287287 | Lcy9g2146 | Lcy-Chr9:46082777 | 6.79E-86 | transposed | |
| Lcy13g0505 | Lcy-Chr13:6237480 | Lcy9g2146 | Lcy-Chr9:46082777 | 2.01E-26 | transposed | |
| Lcy9g1074 | Lcy-Chr9:34616473 | Lcy9g2146 | Lcy-Chr9:46082777 | 4.81E-40 | transposed | |
| Lcy1g0744 | Lcy-Chr1:6395347 | Lcy9g2146 | Lcy-Chr9:46082777 | 1.00E-27 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g2146 | K04122 | - | csv:101209283 | 857.055 |