Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2147 ATGAAGGGTTCGGGGTGTTGTTTGTTCGTCTCTCTTCTTCTTCTATCTTCTTTTACATTTTTCTCTTCGGCTCTTTCCGATGCCGAAGCTTCTTTCATTGCCCGCCGCCAACTTTTAACCCTTCATAAGAACCATGATTTGCCCGACGATTATGAGTCCACAATCCAAGTCAACGAGATCTTCCCCAATCCCCGCCTCCGCCGAGCTTTCATCGCCCTTCAAGCCTGGAAGAAGGCCATTTATTCCGACCCTTTTAACACCACCGCCAATTGGGTCGGCGCCGATGTATGCTCCTACACTGGAGTTTTCTGCGCCCCTGCTCTCGACGACAACAAAATCGAAGTCGTCGCCGGAATCGACCTCAACCATGCCGACATCGCCGGTTACCTGCCCGTCGAGCTCGGTTTGCTGACTGACATTGCGTTGTTTCACATCAACACCAATCGATTCTGCGGCATTGTCCCCTCCAGCTTCTCGAGGCTGATTCTGCTTCACGAACTCGACATTAGCAACAACCGATTCGTTGGCTACTTCCCAGAAGTTGTTGTGAGGATTCCAAATTTGAAATATCTCGACATAAGATACAATGAATTTGAAGGCGAATTGCCTCCTGCGCTTTTCACCAAGGAACTGGATGTAATTTTAATCAATAACAATCGATTCACCTCCTCCATTCCAGAGAATTTTGGGGACTCACCGGCGGCCATAATTGTGATCGCCAACAACAATTTCACTGGCTGCATTCCGAAAAGTATTGGAAAAATGGGGAACACGTTGAACCAGTTTGTAATGTTGAACAATGAATTGGCGGGTTGTTTGCCTGCTGAGATTGGACTGCTTGGAAATGCAACGGTTATTGATGTTTCGTCGAATAAATTGAGTGGGATCTTGCCGACGAGCTTCGATGGGTTGAAGAATGTCGAGATTTTGAATATTTCTTCGAATTTTTTGACTGGGGTTGTGCCGGAGGGGGTGTGTAATTTGCCCAAATTGGGTAATTTCACATTCTCTTTCAATTACTTTAATGGCGAGGCGGATAGATGCATGCCGCAGAAGAGAACAGATATTTTGTTGGATGATGTCGAGAATTGCTTGCCGGAGAGGCCCATGCAGAAGGCAGCCGACACTTGTGGTCCAGTTATTAGCAAGAAAGTTGATTGCAGTAAGGATAAGTGCAGCGGAGGACCGTCACCAGCACCGAAGCCTCAAACCCCACCTTCCGCTGATGATTCTCCGCCACCAGTTCACTCTCCACCACCACAAGTTTCATCATCCCCACCACCGGTTCACTCTCCACCACCACAAGTTTCATCACCCCCACCGCCGGTTTCATCACCCCCACCACCGGTTCACTCTCCACCACCTCCAATTTCATCACCCCCACCACCGATTCACTCTCCACCACCGCCGATTTCATCACCCCCACCACCGGTTCACTCTCCACCACCGCCAGTTTCATCACCCCCACCACCACCGGTTTCATCACCTCCACCGCCTGTTCACTCTCCACCACCACCAGTTTCATCCCCACCACCGCCCGTTCATTCTCCACCACCACCACCAGTTTTCTCACCCCCACCACCGGTTTATTCTCCACCACCACCACCAGTTTTCTCACCCCCACCACCGGTTTACTCTCCACCACCATCACCACCAGTGCACTCACCTCCACCTCCAGTCCAATCTCCTCCACCTCCGGTATTCTCTCCGCCGCCACCTTCTCCATTTCCATCTCCTCCTCCTCCAGTCGCCTCTCCACCGCCTCCACTAGAAGACATCATCCTTCCGCCAAACATTGGCTTCCAGTACTCATCACCGCCTCCACCAATGTTTCAGGGCTACTAA 1845 50.84 MKGSGCCLFVSLLLLSSFTFFSSALSDAEASFIARRQLLTLHKNHDLPDDYESTIQVNEIFPNPRLRRAFIALQAWKKAIYSDPFNTTANWVGADVCSYTGVFCAPALDDNKIEVVAGIDLNHADIAGYLPVELGLLTDIALFHINTNRFCGIVPSSFSRLILLHELDISNNRFVGYFPEVVVRIPNLKYLDIRYNEFEGELPPALFTKELDVILINNNRFTSSIPENFGDSPAAIIVIANNNFTGCIPKSIGKMGNTLNQFVMLNNELAGCLPAEIGLLGNATVIDVSSNKLSGILPTSFDGLKNVEILNISSNFLTGVVPEGVCNLPKLGNFTFSFNYFNGEADRCMPQKRTDILLDDVENCLPERPMQKAADTCGPVISKKVDCSKDKCSGGPSPAPKPQTPPSADDSPPPVHSPPPQVSSSPPPVHSPPPQVSSPPPPVSSPPPPVHSPPPPISSPPPPIHSPPPPISSPPPPVHSPPPPVSSPPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPPVFSPPPPVYSPPPPPVFSPPPPVYSPPPSPPVHSPPPPVQSPPPPVFSPPPPSPFPSPPPPVASPPPPLEDIILPPNIGFQYSSPPPPMFQGY 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46089140 46090984 - Maker00007148 Lcy9g2147 643263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2147 614 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 515 IPR051582 -
Lcy9g2147 614 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515(InterPro)
Lcy9g2147 614 MobiDBLite consensus disorder prediction 540 614 - -
Lcy9g2147 614 MobiDBLite consensus disorder prediction 386 526 - -
Lcy9g2147 614 Gene3D Ribonuclease Inhibitor 70 365 IPR032675 -
Lcy9g2147 614 Pfam Leucine rich repeat 284 339 IPR001611 GO:0005515(InterPro)
Lcy9g2147 614 MobiDBLite consensus disorder prediction 398 526 - -
Lcy9g2147 614 MobiDBLite consensus disorder prediction 540 594 - -
Lcy9g2147 614 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
Lcy9g2147 614 PRINTS Proline rich extensin signature 449 474 - -
Lcy9g2147 614 PRINTS Proline rich extensin signature 412 428 - -
Lcy9g2147 614 PRINTS Proline rich extensin signature 429 446 - -
Lcy9g2147 614 PRINTS Proline rich extensin signature 391 412 - -
Lcy9g2147 614 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
Lcy9g2147 614 SUPERFAMILY L domain-like 71 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0725 Lcy-Chr13:10798525 Lcy9g2147 Lcy-Chr9:46089140 1.25E-54 dispersed
Lcy13g1146 Lcy-Chr13:26469880 Lcy9g2147 Lcy-Chr9:46089140 2.59E-34 dispersed
Lcy2g0804 Lcy-Chr2:7206896 Lcy9g2147 Lcy-Chr9:46089140 8.31E-43 dispersed
Lcy4g0668 Lcy-Chr4:8106355 Lcy9g2147 Lcy-Chr9:46089140 1.23E-39 dispersed
Lcy4g2157 Lcy-Chr4:48125563 Lcy9g2147 Lcy-Chr9:46089140 1.36E-42 dispersed
Lcy9g2147 Lcy-Chr9:46089140 Lcy9g2149 Lcy-Chr9:46106652 4.29E-193 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2147 - - - 0.0