Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2153 ATGTTTCTGGCTTCCAACGCCCTTGTGATGAACACGCCGTCTCCCTTGCCGGACCTCTCCTTGCAGATCAGCCTTCCCTCGTCGTTGGCGCCGCCGTCTGACAAGGCCAAGCCGAGAAGCTCGCCGACTACCGATTCCGGTTGCAGTGGGAGAAGTGACTTGAGCCATGAGAATGGTGTCTTCCGCTTAGGGTTTGAAGTGGGGGATGTGGGTCTTCTTCCTCCTCCTCCTCGGCGGCATCACCAAGCTTGTAACGTCCACGGCCGCCGCGACTTCAAACGAAGCGGCGGCGGAGTCGGGTGTGGAGTGAGGAGAAGCATCCGAGCTCCTAGAATGAGATGGACTACGACTCTTCACGCTCATTTTGTACACGCGGTTGAGCTTCTTGGCGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTACCGAACAGTAAAGAATACTGTCAAGGGAACAGATGATTGTGGAAGGACTGAGCTTGAAGCAGATGCTGTTTTATCTTCATTATCTGTTAAAAAATCTAACTTTGAATCGCCTCAGTTGCAGAGAATCCAAAGAAGTAGTTTGGTAGCACCAATGCACAAGAGTTGCGAGAGGACCAAGTCAAACGGCGACACTTTCGCTAAATCTAGAGGGATGAAGGTGGATGGAATCAATAGAGATTATCACGAGGCTCTCAGCATGCAGCGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTTGATTATGGTGACACAAATGAGCTTACCCTTCTCAATTGCTAA 831 49.34 MFLASNALVMNTPSPLPDLSLQISLPSSLAPPSDKAKPRSSPTTDSGCSGRSDLSHENGVFRLGFEVGDVGLLPPPPRRHHQACNVHGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRTELEADAVLSSLSVKKSNFESPQLQRIQRSSLVAPMHKSCERTKSNGDTFAKSRGMKVDGINRDYHEALSMQRINLEFTLGRPSWQFDYGDTNELTLLNC 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46140999 46145042 + Maker00007226 Lcy9g2153 643269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2153 276 SUPERFAMILY Homeodomain-like 107 164 IPR009057 -
Lcy9g2153 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 110 163 IPR006447 GO:0003677(InterPro)
Lcy9g2153 276 MobiDBLite consensus disorder prediction 37 53 - -
Lcy9g2153 276 Pfam Myb-like DNA-binding domain 111 162 IPR001005 -
Lcy9g2153 276 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 12 263 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Lcy9g2153 276 Gene3D - 109 166 - -
Lcy9g2153 276 MobiDBLite consensus disorder prediction 22 53 - -
Lcy9g2153 276 FunFam Myb family transcription factor 108 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2153 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2360 Lcy-Chr5:46438299 Lcy9g2153 Lcy-Chr9:46140999 1.24E-30 dispersed
Lcy6g2249 Lcy-Chr6:47099200 Lcy9g2153 Lcy-Chr9:46140999 4.20E-32 dispersed
Lcy7g1497 Lcy-Chr7:26148831 Lcy9g2153 Lcy-Chr9:46140999 1.21E-18 dispersed
Lcy9g1476 Lcy-Chr9:39833580 Lcy9g2153 Lcy-Chr9:46140999 2.13E-16 dispersed
Lcy13g2020 Lcy-Chr13:39171714 Lcy9g2153 Lcy-Chr9:46140999 1.01E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy12g0279 . 1 190 G2-like Transcription Factor Family AT5G16560 56.1 6.7e-42 169.1
Lcy12g1970 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 5.7e-41 166.0
Lcy12g1970 . 196 389 G2-like Transcription Factor Family AT4G17695 50.3 1.5e-36 151.0
Lcy13g2020 . 8 151 G2-like Transcription Factor Family AT5G42630 64.2 2.2e-42 169.9
Lcy9g2153 . 10 182 G2-like Transcription Factor Family AT5G42630 58.2 1.1e-41 167.5
Lcy10g0975 . 20 261 G2-like Transcription Factor Family AT1G25550 56.3 1.8e-54 210.3
Lcy7g0438 . 193 434 G2-like Transcription Factor Family AT1G25550 50.2 5.8e-53 205.3
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT5G05090 57.0 2.0e-74 276.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT5G05090 57.5 5.3e-72 268.5
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy8g1657 . 1 333 G2-like Transcription Factor Family AT1G79430 55.8 2.3e-78 290.0
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT3G10760 62.6 1.7e-91 333.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT3G10760 58.8 2.5e-87 319.7
Lcy1g1774 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.5e-60 230.3
Lcy12g2089 . 243 460 G2-like Transcription Factor Family AT2G20400 50.2 1.1e-44 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20725 None None None None Lcy TF