Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g2181 | AAACCAAAAAGCAAAAACCAATCAGAGACCTTCCCAATGTATCTTCTTCTTCTTCTTCTTCTCACAATCCTCTTCAAATTTCTCTACTCCAATTTTTGGGTTCCATGGAGAATTCAAATCCACTTCCGAAACCAGGGGATAACCGGCCCTTCCTACCGTCCGATCACTGGTAACGCCGTCGAGATCCGCCGTCTGTACGCGGAGGCGGAATCCAAGCCGATTCAGTTTAACCACGATATACTGTGTCGTGTGCTGCCTTATATTCACCGGTGGTCCGGCGAGTATGGAAAGACGTTTCTGTACTGGTTCGGGTCGAACCCGAGACTGGTCATATCCGACCCGGATATGATTAAGGATGTGCTTACGAATACGGGCGGGCCCTTCAGAAAGGTCGGGTTCAACCCGCTTTCGAAGTTGCTCTTCGGAGAGGGACTTGTCGGACTCGACGGCGAAAAATGGGTCGTCCACCGGAGGATCGCAAATCAGGCTTTCACTATCGAGCGCGTAAAGGGTTGGTTATCGGAGATTGTTGAAAGTGTGTGTAATGAGTTGGAGAAATGGGAAGAGATGAAGGGAGGAAAGAAGGAGTTTGAATTGGACGTCCATAAACAACTTCGTCTCCTCTCAGCAGACGTAATTTCAAGAACTGCTTTTGGAAGTGATTATGAAGAAGGCAAACGCATCTTCAATTTGCAAGAAAAGCAAATGCATCATTTTCTCGAGGCAGTCACAAGTATTTATATTCCTGGTTTCAGATTTTTGCCTACCAAGAAGAACAGAGAGAGGCAGAGATTGGAGAAGGAAACTCGTGAATCAATAAAAGCGTTGATTGAGAGTGAGGCAAACAGCAAAGGGAGGGAAAACTCAACTAATCTACTCAGCTTGTTGATGTCACCTTACAAGAACAAGAATGGAGAAGAAGAAAAACTTGGAGTGGAGGAAATCATAAACGAATGCAAGACATTCTATTTTGCAGGAATGGAAACAACGGCTAATCTCTTAACTTGGGCCCTTCTTCTACTAGCAAAGCATCAAGAATGGCAAAACAAAGCTCGAGAAGAAATTATCAACGTCTGCGGGCGTAAGACACCGCCTGCAGCAGATAATTTAAGCGAGCTTAAACTAGTGGGTATGATAATCAATGAAACGCTTCGACTTTACCCTCCAGCGACGATGGTGATGAGACGGGCTTCGAAGCGGCTGACGCTAGGGAACGTTGAGGTTCCGGAAGGCACACAGCTGCAAATTTCGTTGGCTGCTATCCACCATGACAAGGAGCTTTGGGGAGAAGATGCCAATAGCTTCAACCCTTTGAGATTTTGTGAGGCACGGAAGCATTTGGCTTCGTTTGTGCCATTTTCGTTGGGTCCTAGAATCTGTGTAGGCCAGAATTTGGCTTTGGTTGAGGCCAAAATTGCCTTGGCCATGATAGTGCAGCGATTCTCTCTCTCTGTTTCTCCAGCCTACGCTCATGCTCCCAAGATGTTTGTAAGCTTACAGCCTCAGTTTGGTGCTCAGCTCTTCGTTAGGAGCTTGTGGGAGTGA | 1545 | 46.54 | KPKSKNQSETFPMYLLLLLLLTILFKFLYSNFWVPWRIQIHFRNQGITGPSYRPITGNAVEIRRLYAEAESKPIQFNHDILCRVLPYIHRWSGEYGKTFLYWFGSNPRLVISDPDMIKDVLTNTGGPFRKVGFNPLSKLLFGEGLVGLDGEKWVVHRRIANQAFTIERVKGWLSEIVESVCNELEKWEEMKGGKKEFELDVHKQLRLLSADVISRTAFGSDYEEGKRIFNLQEKQMHHFLEAVTSIYIPGFRFLPTKKNRERQRLEKETRESIKALIESEANSKGRENSTNLLSLLMSPYKNKNGEEEKLGVEEIINECKTFYFAGMETTANLLTWALLLLAKHQEWQNKAREEIINVCGRKTPPAADNLSELKLVGMIINETLRLYPPATMVMRRASKRLTLGNVEVPEGTQLQISLAAIHHDKELWGEDANSFNPLRFCEARKHLASFVPFSLGPRICVGQNLALVEAKIALAMIVQRFSLSVSPAYAHAPKMFVSLQPQFGAQLFVRSLWE | 514 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 46468297 | 46471850 | - | Maker00007294 | Lcy9g2181 | 643297 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g2181 | 514 | Gene3D | Cytochrome P450 | 32 | 511 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | PRINTS | E-class P450 group I signature | 314 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | PRINTS | E-class P450 group I signature | 92 | 111 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | PRINTS | E-class P450 group I signature | 208 | 226 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | PRINTS | E-class P450 group I signature | 460 | 483 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | PRINTS | E-class P450 group I signature | 334 | 360 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | PRINTS | E-class P450 group I signature | 450 | 460 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 20 | 504 | IPR050665 | GO:0004497(PANTHER) | |
| Lcy9g2181 | 514 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 453 | 462 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy9g2181 | 514 | PRINTS | P450 superfamily signature | 325 | 342 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | PRINTS | P450 superfamily signature | 460 | 471 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | PRINTS | P450 superfamily signature | 451 | 460 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | PRINTS | P450 superfamily signature | 378 | 389 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | Pfam | Cytochrome P450 | 88 | 490 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g2181 | 514 | SUPERFAMILY | Cytochrome P450 | 79 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy9g2181 | Lcy-Chr9:46468297 | Lcy13g1039 | Lcy-Chr13:22711472 | 6.47E-104 | dispersed | |
| Lcy9g2180 | Lcy-Chr9:46464919 | Lcy9g2181 | Lcy-Chr9:46468297 | 1.21E-293 | tandem | |
| Lcy7g0109 | Lcy-Chr7:1004262 | Lcy9g2181 | Lcy-Chr9:46468297 | 1.29E-17 | wgd |
Pathway information