Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2183 ATGGTTGATTTGGAAAATTCTTCGCCGGTTGCGGTTTCTGGAGATGCTGGTTTGTCTCCTTCAGGTTATATTGAACCAGTGACGGTGGTGGCTCCGCCAAAGAAGAAACGGAATCTACCTGGAATGCCAGATCCGGCGGCGGAGGTGATTGCTTTGTCGCCGGATAGTTTACTGGCGACGAACAGGTTCGTGTGCGAGATTTGCAACAAAGGTTTCCAACGGGACCAGAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCGTGGAAGCTCCGACAGCGGACCAGCAATGAGGTGCGTAAGCGCGTCTATGTCTGCCCGGAGCCTTCCTGCGTCCACCACAATCCAGCGAGAGCGCTCGGCGATCTCACCGGAATAAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAGAGATGCTCGAAGAAATACGCCGTACAATCCGATTGGAAAGCGCATATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGTGGCACTTTATTTTCTAGGAGGGATAGCTTTATTACACATCGAGCCTTTTGCGATGTGTTGGCGGAGGAAAGTTCTCGTGCTCAAACCCTAGCAGTTCCGAACTCTGAAGGAAAGGAATCCGCCACTTCGAAAGCCGCCGTGGCTTCGCCTCCTCCGCCGCCACTAACTCCGTCGACCACGGTGGTTTCTCCGGCGTTGTCCATTCACAGCTCAGAGTTAGCTGATAATCCGATAAGACTTCCATCTGTATCAACGCCTGCAGCCGCTACATGCTTGACCTCTGCGGCTGCCAATAGTACCACAAATGCAAGCGCTAATGTCAGTAGCTCGAACGATTTGTTTGGAAATAATACTGTTTTTGCCCCTTCTGCATCAATCTCAGCGACAACCCAAATATCCCCAACATTAGCACCGCCGAATTTACCCACCTCAATAGTTCCCTACGATTGCCCCTCTACTCGCACTTCAGTTTCCACCGTTAATCCCACATCGCTTTCACTCTCTACATCTCTCTATCTTTCCACTAAGGGATCCTCCCTCTTTGCCCCACCTGACCAAGACCGTCTGCAGTACACGTGGTCCACTCAACCGGCGGCCATGTCCGCCACCGCCTTGCTGCAAAAGGCAGCGGAAATGGGTGCAACGGCGTCTAATCCGTCGTTGTTCCGAGGCTTTGGGATGGCTACTTCTTCTTCTGGTCAAGATACCTCCGCCACTGCTCAATGGAGTAGGAATCTAAACCGAGATCACCGGAATGGGGATTCGTTAACGGCTGGTTTAGGGCTTGAACTTCCCTCCGGACCGGCCGGTTCTGGTTTGATGATGGCGGGTGGTCCATTTTGCTCGTATGGAAGTCAGCCCATGACGAGGGATCTTCTTGGCCTTGGCTTGGGCGGCGGTGGGGCCTCAGCAAGTAGATTTTCGGCTTTGATCGCTTCCATGGGTGGTGGGTCTGGTTACGACGTTGCAGCTTCAGTCGCCTGCGGCGGAAGTGGTGGCGGAAGTGGCGACGGAGGCTCCTCCGGCGACGCTTGGGATCGAGATGAACAAGAGGGAAAACATTGA 1575 53.4 MVDLENSSPVAVSGDAGLSPSGYIEPVTVVAPPKKKRNLPGMPDPAAEVIALSPDSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESSRAQTLAVPNSEGKESATSKAAVASPPPPPLTPSTTVVSPALSIHSSELADNPIRLPSVSTPAAATCLTSAAANSTTNASANVSSSNDLFGNNTVFAPSASISATTQISPTLAPPNLPTSIVPYDCPSTRTSVSTVNPTSLSLSTSLYLSTKGSSLFAPPDQDRLQYTWSTQPAAMSATALLQKAAEMGATASNPSLFRGFGMATSSSGQDTSATAQWSRNLNRDHRNGDSLTAGLGLELPSGPAGSGLMMAGGPFCSYGSQPMTRDLLGLGLGGGGASASRFSALIASMGGGSGYDVAASVACGGSGGGSGDGGSSGDAWDRDEQEGKH 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46486329 46489869 - Maker00007285 Lcy9g2183 643299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2183 524 Gene3D Classic Zinc Finger 63 105 - -
Lcy9g2183 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 467 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy9g2183 524 MobiDBLite consensus disorder prediction 501 524 - -
Lcy9g2183 524 Gene3D Classic Zinc Finger 118 197 - -
Lcy9g2183 524 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 100 134 - -
Lcy9g2183 524 FunFam protein indeterminate-domain 12-like 42 110 - -
Lcy9g2183 524 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 138 162 - -
Lcy9g2183 524 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Lcy9g2183 524 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 204 - -
Lcy9g2183 524 MobiDBLite consensus disorder prediction 198 212 - -
Lcy9g2183 524 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lcy9g2183 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Lcy9g2183 524 Pfam Zinc-finger of C2H2 type 63 85 IPR013087 -
Lcy9g2183 524 SMART c2h2final6 139 159 IPR013087 -
Lcy9g2183 524 SMART c2h2final6 63 85 IPR013087 -
Lcy9g2183 524 SMART c2h2final6 104 134 IPR013087 -
Lcy9g2183 524 MobiDBLite consensus disorder prediction 198 231 - -
Lcy9g2183 524 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0727 Lcy-Chr1:6217705 Lcy9g2183 Lcy-Chr9:46486329 9.54E-135 dispersed
Lcy2g2121 Lcy-Chr2:42314412 Lcy9g2183 Lcy-Chr9:46486329 1.01E-99 dispersed
Lcy3g1706 Lcy-Chr3:44369158 Lcy9g2183 Lcy-Chr9:46486329 2.36E-98 dispersed
Lcy6g0950 Lcy-Chr6:9845402 Lcy9g2183 Lcy-Chr9:46486329 3.32E-108 dispersed
Lcy8g1391 Lcy-Chr8:40605432 Lcy9g2183 Lcy-Chr9:46486329 1.86E-100 dispersed
Lcy9g1971 Lcy-Chr9:44649215 Lcy9g2183 Lcy-Chr9:46486329 7.03E-102 dispersed
Lcy1g0725 Lcy-Chr1:6207818 Lcy9g2183 Lcy-Chr9:46486329 1.19E-135 wgd
Lcy13g2000 Lcy-Chr13:38981648 Lcy9g2183 Lcy-Chr9:46486329 4.75E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20726 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2183 K25869 - mdm:114826446 506.138