Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2183 | ATGGTTGATTTGGAAAATTCTTCGCCGGTTGCGGTTTCTGGAGATGCTGGTTTGTCTCCTTCAGGTTATATTGAACCAGTGACGGTGGTGGCTCCGCCAAAGAAGAAACGGAATCTACCTGGAATGCCAGATCCGGCGGCGGAGGTGATTGCTTTGTCGCCGGATAGTTTACTGGCGACGAACAGGTTCGTGTGCGAGATTTGCAACAAAGGTTTCCAACGGGACCAGAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCGTGGAAGCTCCGACAGCGGACCAGCAATGAGGTGCGTAAGCGCGTCTATGTCTGCCCGGAGCCTTCCTGCGTCCACCACAATCCAGCGAGAGCGCTCGGCGATCTCACCGGAATAAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAGAGATGCTCGAAGAAATACGCCGTACAATCCGATTGGAAAGCGCATATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGTGGCACTTTATTTTCTAGGAGGGATAGCTTTATTACACATCGAGCCTTTTGCGATGTGTTGGCGGAGGAAAGTTCTCGTGCTCAAACCCTAGCAGTTCCGAACTCTGAAGGAAAGGAATCCGCCACTTCGAAAGCCGCCGTGGCTTCGCCTCCTCCGCCGCCACTAACTCCGTCGACCACGGTGGTTTCTCCGGCGTTGTCCATTCACAGCTCAGAGTTAGCTGATAATCCGATAAGACTTCCATCTGTATCAACGCCTGCAGCCGCTACATGCTTGACCTCTGCGGCTGCCAATAGTACCACAAATGCAAGCGCTAATGTCAGTAGCTCGAACGATTTGTTTGGAAATAATACTGTTTTTGCCCCTTCTGCATCAATCTCAGCGACAACCCAAATATCCCCAACATTAGCACCGCCGAATTTACCCACCTCAATAGTTCCCTACGATTGCCCCTCTACTCGCACTTCAGTTTCCACCGTTAATCCCACATCGCTTTCACTCTCTACATCTCTCTATCTTTCCACTAAGGGATCCTCCCTCTTTGCCCCACCTGACCAAGACCGTCTGCAGTACACGTGGTCCACTCAACCGGCGGCCATGTCCGCCACCGCCTTGCTGCAAAAGGCAGCGGAAATGGGTGCAACGGCGTCTAATCCGTCGTTGTTCCGAGGCTTTGGGATGGCTACTTCTTCTTCTGGTCAAGATACCTCCGCCACTGCTCAATGGAGTAGGAATCTAAACCGAGATCACCGGAATGGGGATTCGTTAACGGCTGGTTTAGGGCTTGAACTTCCCTCCGGACCGGCCGGTTCTGGTTTGATGATGGCGGGTGGTCCATTTTGCTCGTATGGAAGTCAGCCCATGACGAGGGATCTTCTTGGCCTTGGCTTGGGCGGCGGTGGGGCCTCAGCAAGTAGATTTTCGGCTTTGATCGCTTCCATGGGTGGTGGGTCTGGTTACGACGTTGCAGCTTCAGTCGCCTGCGGCGGAAGTGGTGGCGGAAGTGGCGACGGAGGCTCCTCCGGCGACGCTTGGGATCGAGATGAACAAGAGGGAAAACATTGA | 1575 | 53.4 | MVDLENSSPVAVSGDAGLSPSGYIEPVTVVAPPKKKRNLPGMPDPAAEVIALSPDSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESSRAQTLAVPNSEGKESATSKAAVASPPPPPLTPSTTVVSPALSIHSSELADNPIRLPSVSTPAAATCLTSAAANSTTNASANVSSSNDLFGNNTVFAPSASISATTQISPTLAPPNLPTSIVPYDCPSTRTSVSTVNPTSLSLSTSLYLSTKGSSLFAPPDQDRLQYTWSTQPAAMSATALLQKAAEMGATASNPSLFRGFGMATSSSGQDTSATAQWSRNLNRDHRNGDSLTAGLGLELPSGPAGSGLMMAGGPFCSYGSQPMTRDLLGLGLGGGGASASRFSALIASMGGGSGYDVAASVACGGSGGGSGDGGSSGDAWDRDEQEGKH | 524 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 46486329 | 46489869 | - | Maker00007285 | Lcy9g2183 | 643299 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2183 | 524 | Gene3D | Classic Zinc Finger | 63 | 105 | - | - | |
Lcy9g2183 | 524 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 33 | 467 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lcy9g2183 | 524 | MobiDBLite | consensus disorder prediction | 501 | 524 | - | - | |
Lcy9g2183 | 524 | Gene3D | Classic Zinc Finger | 118 | 197 | - | - | |
Lcy9g2183 | 524 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 100 | 134 | - | - | |
Lcy9g2183 | 524 | FunFam | protein indeterminate-domain 12-like | 42 | 110 | - | - | |
Lcy9g2183 | 524 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 138 | 162 | - | - | |
Lcy9g2183 | 524 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 160 | IPR036236 | - | |
Lcy9g2183 | 524 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 165 | 204 | - | - | |
Lcy9g2183 | 524 | MobiDBLite | consensus disorder prediction | 198 | 212 | - | - | |
Lcy9g2183 | 524 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
Lcy9g2183 | 524 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 85 | IPR013087 | - | |
Lcy9g2183 | 524 | Pfam | Zinc-finger of C2H2 type | 63 | 85 | IPR013087 | - | |
Lcy9g2183 | 524 | SMART | c2h2final6 | 139 | 159 | IPR013087 | - | |
Lcy9g2183 | 524 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - | |
Lcy9g2183 | 524 | SMART | c2h2final6 | 104 | 134 | IPR013087 | - | |
Lcy9g2183 | 524 | MobiDBLite | consensus disorder prediction | 198 | 231 | - | - | |
Lcy9g2183 | 524 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 117 | 196 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0727 | Lcy-Chr1:6217705 | Lcy9g2183 | Lcy-Chr9:46486329 | 9.54E-135 | dispersed | |
Lcy2g2121 | Lcy-Chr2:42314412 | Lcy9g2183 | Lcy-Chr9:46486329 | 1.01E-99 | dispersed | |
Lcy3g1706 | Lcy-Chr3:44369158 | Lcy9g2183 | Lcy-Chr9:46486329 | 2.36E-98 | dispersed | |
Lcy6g0950 | Lcy-Chr6:9845402 | Lcy9g2183 | Lcy-Chr9:46486329 | 3.32E-108 | dispersed | |
Lcy8g1391 | Lcy-Chr8:40605432 | Lcy9g2183 | Lcy-Chr9:46486329 | 1.86E-100 | dispersed | |
Lcy9g1971 | Lcy-Chr9:44649215 | Lcy9g2183 | Lcy-Chr9:46486329 | 7.03E-102 | dispersed | |
Lcy1g0725 | Lcy-Chr1:6207818 | Lcy9g2183 | Lcy-Chr9:46486329 | 1.19E-135 | wgd | |
Lcy13g2000 | Lcy-Chr13:38981648 | Lcy9g2183 | Lcy-Chr9:46486329 | 4.75E-131 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20726 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g2183 | K25869 | - | mdm:114826446 | 506.138 |