Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2212 ATGAGTTTAACGGACGCGACCCGAGAAATGGGGTGGTTAAAAAAACGTTTTAATAAGATGACGATGAGGATTTCAGATCCTAAGGGACGAAAATCGAAGAGCTGGGGGAATTCAAGGTGGAGGGAAAAGGCTAGTTTCTATATTTTCTCTAATTCGATCCATCAAAATCCTCCGAGTTTTGCAGAATCTCTTGGAGATTTGTTTCTCTCGTGGTTTTCTCCGCTGCTGTTCTCATTTTTGCGTGAATCGAATACTGCTATCACGATGCCTCTGAGAGGCATAATTCGTGAGCAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTCCCCGAGCAGCCTTCTTCTTCTTCTTTTCCGGTTCCGATTGAGCAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTAGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGCCGGGATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGGTTACAAAGGAAGTTGTGGGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAGCAGCCGGGACCAAGAGACACCCCAATCCAGTGCTTCATTAAGAGAGAAAGAGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCCGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATTCGACGAGCAACGAGTACTGATTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAACAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCACATGACCCAAAATTGCGAACCAGTAGATCAAAACGAAGAATCCATTTGAGACAGGTTTCTCCAAGTAAAACTCACCCCAATTATAAAGTTGCTGCCGTAGCTTACGAGCTCAACGTCCTCCGTACCAGAGGTCCGAGGAGAATGAGGTGCACCATGCATTCAATACCTGTAGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTTAAAGACACTATCAACGAGCATCATTCATCCACATCGACTTGCAAAGGAAAGAAGCCGATATCCGAGTCCCCCGGGCCTCAGGAGTCGATAGCTCCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTAAACTTCAAAGGGCGCGTCACGGTTGCTTCGGTGAAGAACTTCCAGCTGGTTGCTGCAGCGGAGACGAATCAAAATGTGTCTGCAGCCGAACAAGAAAAAGTGATTCTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGCCTTAGTAGCTTCGATACCAAGCCAGCCTGTGAATGA 1488 47.11 MSLTDATREMGWLKKRFNKMTMRISDPKGRKSKSWGNSRWREKASFYIFSNSIHQNPPSFAESLGDLFLSWFSPLLFSFLRESNTAITMPLRGIIREQSEIREGSGNSSRKVREGVQMRHLGKSHIVPEQPSSSSFPVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVACASVCRSWRMVTKEVVGTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRATSTDFIVSLVPDDFSRTSNNYIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLRQVSPSKTHPNYKVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDTINEHHSSTSTCKGKKPISESPGPQESIAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETNQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46712159 46715376 - Maker00007250 Lcy9g2212 643328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2212 495 Gene3D Tubby Protein; Chain A 203 495 IPR025659 -
Lcy9g2212 495 Pfam Tub family 206 490 IPR000007 -
Lcy9g2212 495 ProSitePatterns Tub family signature 2. 480 495 IPR018066 -
Lcy9g2212 495 SUPERFAMILY F-box domain 132 187 IPR036047 GO:0005515(InterPro)
Lcy9g2212 495 Gene3D - 140 191 - -
Lcy9g2212 495 PANTHER TUBBY-RELATED 108 494 - -
Lcy9g2212 495 MobiDBLite consensus disorder prediction 376 398 - -
Lcy9g2212 495 ProSitePatterns Tub family signature 1. 423 436 IPR018066 -
Lcy9g2212 495 Pfam F-box-like 145 187 IPR001810 GO:0005515(InterPro)
Lcy9g2212 495 SUPERFAMILY Tubby C-terminal domain-like 194 495 IPR025659 -
Lcy9g2212 495 CDD F-box_AtTLP-like 145 189 - -
Lcy9g2212 495 PRINTS Tubby superfamily signature 473 495 IPR000007 -
Lcy9g2212 495 PRINTS Tubby superfamily signature 261 277 IPR000007 -
Lcy9g2212 495 PRINTS Tubby superfamily signature 423 439 IPR000007 -
Lcy9g2212 495 PRINTS Tubby superfamily signature 277 301 IPR000007 -
Lcy9g2212 495 PRINTS Tubby superfamily signature 325 352 IPR000007 -
Lcy9g2212 495 PRINTS Tubby superfamily signature 452 471 IPR000007 -
Lcy9g2212 495 PRINTS Tubby superfamily signature 405 422 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g0979 Lcy-Chr9:32733901 Lcy9g2212 Lcy-Chr9:46712159 4.78E-143 dispersed
Lcy9g2212 Lcy-Chr9:46712159 Lcy13g1039 Lcy-Chr13:22711472 2.35E-38 dispersed
Lcy1g0706 Lcy-Chr1:6046801 Lcy9g2212 Lcy-Chr9:46712159 5.51E-172 wgd
Lcy6g0905 Lcy-Chr6:9221119 Lcy9g2212 Lcy-Chr9:46712159 2.96E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20728 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2212 K19600 - csv:101222500 754.207