Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2212 | ATGAGTTTAACGGACGCGACCCGAGAAATGGGGTGGTTAAAAAAACGTTTTAATAAGATGACGATGAGGATTTCAGATCCTAAGGGACGAAAATCGAAGAGCTGGGGGAATTCAAGGTGGAGGGAAAAGGCTAGTTTCTATATTTTCTCTAATTCGATCCATCAAAATCCTCCGAGTTTTGCAGAATCTCTTGGAGATTTGTTTCTCTCGTGGTTTTCTCCGCTGCTGTTCTCATTTTTGCGTGAATCGAATACTGCTATCACGATGCCTCTGAGAGGCATAATTCGTGAGCAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTCCCCGAGCAGCCTTCTTCTTCTTCTTTTCCGGTTCCGATTGAGCAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTAGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGCCGGGATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGGTTACAAAGGAAGTTGTGGGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAGCAGCCGGGACCAAGAGACACCCCAATCCAGTGCTTCATTAAGAGAGAAAGAGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCCGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATTCGACGAGCAACGAGTACTGATTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAACAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCACATGACCCAAAATTGCGAACCAGTAGATCAAAACGAAGAATCCATTTGAGACAGGTTTCTCCAAGTAAAACTCACCCCAATTATAAAGTTGCTGCCGTAGCTTACGAGCTCAACGTCCTCCGTACCAGAGGTCCGAGGAGAATGAGGTGCACCATGCATTCAATACCTGTAGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTTAAAGACACTATCAACGAGCATCATTCATCCACATCGACTTGCAAAGGAAAGAAGCCGATATCCGAGTCCCCCGGGCCTCAGGAGTCGATAGCTCCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTAAACTTCAAAGGGCGCGTCACGGTTGCTTCGGTGAAGAACTTCCAGCTGGTTGCTGCAGCGGAGACGAATCAAAATGTGTCTGCAGCCGAACAAGAAAAAGTGATTCTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGCCTTAGTAGCTTCGATACCAAGCCAGCCTGTGAATGA | 1488 | 47.11 | MSLTDATREMGWLKKRFNKMTMRISDPKGRKSKSWGNSRWREKASFYIFSNSIHQNPPSFAESLGDLFLSWFSPLLFSFLRESNTAITMPLRGIIREQSEIREGSGNSSRKVREGVQMRHLGKSHIVPEQPSSSSFPVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVACASVCRSWRMVTKEVVGTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRATSTDFIVSLVPDDFSRTSNNYIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLRQVSPSKTHPNYKVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDTINEHHSSTSTCKGKKPISESPGPQESIAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETNQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 495 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 46712159 | 46715376 | - | Maker00007250 | Lcy9g2212 | 643328 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2212 | 495 | Gene3D | Tubby Protein; Chain A | 203 | 495 | IPR025659 | - | |
Lcy9g2212 | 495 | Pfam | Tub family | 206 | 490 | IPR000007 | - | |
Lcy9g2212 | 495 | ProSitePatterns | Tub family signature 2. | 480 | 495 | IPR018066 | - | |
Lcy9g2212 | 495 | SUPERFAMILY | F-box domain | 132 | 187 | IPR036047 | GO:0005515(InterPro) | |
Lcy9g2212 | 495 | Gene3D | - | 140 | 191 | - | - | |
Lcy9g2212 | 495 | PANTHER | TUBBY-RELATED | 108 | 494 | - | - | |
Lcy9g2212 | 495 | MobiDBLite | consensus disorder prediction | 376 | 398 | - | - | |
Lcy9g2212 | 495 | ProSitePatterns | Tub family signature 1. | 423 | 436 | IPR018066 | - | |
Lcy9g2212 | 495 | Pfam | F-box-like | 145 | 187 | IPR001810 | GO:0005515(InterPro) | |
Lcy9g2212 | 495 | SUPERFAMILY | Tubby C-terminal domain-like | 194 | 495 | IPR025659 | - | |
Lcy9g2212 | 495 | CDD | F-box_AtTLP-like | 145 | 189 | - | - | |
Lcy9g2212 | 495 | PRINTS | Tubby superfamily signature | 473 | 495 | IPR000007 | - | |
Lcy9g2212 | 495 | PRINTS | Tubby superfamily signature | 261 | 277 | IPR000007 | - | |
Lcy9g2212 | 495 | PRINTS | Tubby superfamily signature | 423 | 439 | IPR000007 | - | |
Lcy9g2212 | 495 | PRINTS | Tubby superfamily signature | 277 | 301 | IPR000007 | - | |
Lcy9g2212 | 495 | PRINTS | Tubby superfamily signature | 325 | 352 | IPR000007 | - | |
Lcy9g2212 | 495 | PRINTS | Tubby superfamily signature | 452 | 471 | IPR000007 | - | |
Lcy9g2212 | 495 | PRINTS | Tubby superfamily signature | 405 | 422 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy9g0979 | Lcy-Chr9:32733901 | Lcy9g2212 | Lcy-Chr9:46712159 | 4.78E-143 | dispersed | |
Lcy9g2212 | Lcy-Chr9:46712159 | Lcy13g1039 | Lcy-Chr13:22711472 | 2.35E-38 | dispersed | |
Lcy1g0706 | Lcy-Chr1:6046801 | Lcy9g2212 | Lcy-Chr9:46712159 | 5.51E-172 | wgd | |
Lcy6g0905 | Lcy-Chr6:9221119 | Lcy9g2212 | Lcy-Chr9:46712159 | 2.96E-184 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20728 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g2212 | K19600 | - | csv:101222500 | 754.207 |