Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2233 ATGGCCGATGGAGGCTCAGCTTCTGGGAACAACAGAATGTGGTGTTCCATTCCTGAGAGGCTTCAACTGCATGGCGCCATGCTCGCCTTGCAGTTTGGCTACGCTGGCTTCCACGTTGTCTCTAGAGCTGCCCTTAATATGGGCATTAGTAAACTGGTCTTCCTAGTTTACAGGAACATCATTGCCTTTCTCCTCCTCCTTCCCTTTGCATATTTCATCGAAAAGAAGGAGCGCCCTGCCATTAATCTCAATTTTCTTCTTCAGTTCTTCCTGCTTGCACTTGTTGGAATCACGGCGAACCAGGGGTTCTACTTGCTAGGTTTGGAGCACACGTCGCCGACGTTTGCATCGGCGATACAAAACTCGGTTCCGGCGATTACGTTCCTGATGGCTGCATTGCTCCGGCAAGTAATAGAACAAGTGCTACTAAACAGAAAAGATGGTATAGCAAAAGTGATGGGAACAATATGCTGTGTCGCCGGGGCCACAGTGATCACTCTATACAAAGGTCCAACAATATACAGCCCAGGTCCTTCACTGCAAACAGCCACCACCGCACCCATTTTTGCTTCTCTTGGGGACGCTAGCGGCAAAAGCTGGACCCTGGGCTGCGTCTTTTTGATCGGCCATTGCTTGTCCTGGTCTGGATGGCTTGTTTTGCAGGCACCCGTCTTGAAAAAGTACCCCGCTCGTCTCTCTGTCACTTCTTATACTTGTTTCTTTGGGATAATTCAGTTTGTCATCATCGCTGCCATTGCCGAGAGAGATGCTCAGGCTTGGCTCTTCCACTCTACTGGTGAAATTTTCAGCGTGCTATACGCGGGAGTGGTAGCTTCTGGAATTGCTTTTGCTGTTCAGATATGGTGCATTGACAGAGGTGGCCCTGTCTTTGTCGCTGTTTATCAACCTGTTCAGACTCTCGTTGTCGCTATCATGGCTTCCTTCGCCTTGGGTGAAGAGTTCTACTTGGGCGGGATCATCGGGGCGGTGCTGATCATCACAGGCTTATACTTCGTCCTATGGGGCAAAAGCGAAGAGAGAAAATTTGCACTTGAGAAGGCTGCGATCCTCTCCGCTCCGGACCACAGTAACAACAGAACACCCGCCCACATCAAGCCCTCCATCACTCAGCCACTTCTCATTCACTCATCAAACGACAACGTTTGA 1167 49.96 MADGGSASGNNRMWCSIPERLQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFLVYRNIIAFLLLLPFAYFIEKKERPAINLNFLLQFFLLALVGITANQGFYLLGLEHTSPTFASAIQNSVPAITFLMAALLRQVIEQVLLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPGPSLQTATTAPIFASLGDASGKSWTLGCVFLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGIIQFVIIAAIAERDAQAWLFHSTGEIFSVLYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIITGLYFVLWGKSEERKFALEKAAILSAPDHSNNRTPAHIKPSITQPLLIHSSNDNV 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46880346 46883452 - Maker00007071 Lcy9g2233 643349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2233 388 Pfam EamA-like transporter family 202 340 IPR000620 GO:0016020(InterPro)
Lcy9g2233 388 Pfam EamA-like transporter family 28 166 IPR000620 GO:0016020(InterPro)
Lcy9g2233 388 PANTHER WAT1-RELATED PROTEIN 26 352 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy9g2233 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 345 - -
Lcy9g2233 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 57 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1695 Lcy-Chr4:42759631 Lcy9g2233 Lcy-Chr9:46880346 1.30E-59 dispersed
Lcy13g1942 Lcy-Chr13:38466026 Lcy9g2233 Lcy-Chr9:46880346 3.37E-46 transposed
Lcy2g0410 Lcy-Chr2:3422850 Lcy9g2233 Lcy-Chr9:46880346 1.84E-131 transposed
Lcy9g1537 Lcy-Chr9:40474473 Lcy9g2233 Lcy-Chr9:46880346 1.60E-70 transposed
Lcy13g1941 Lcy-Chr13:38464860 Lcy9g2233 Lcy-Chr9:46880346 2.36E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2233 - - - 0.0