Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2234 ATGACGGGGTTGTTCTATTTAGGTGGGAAACAAGAGGAAGATCAAGAAGAAAGAGGAAGAGAACAGCAATTGTTTTTATACAGTAGAAACAACGAAGAGATCTACTCCAAAGGGTTGGAGATATGGCCACAGTATGCCCAGAATCATCACCATCATCAGCAGCAGCAGCAAAATATGGAGAATTACATTTCCTTTGGAGTGGGGCCTAGTAGGAGGAGCTTGATGATGAACGGCTCTGATCATGAGTTTGTTTCGAGATCAGGGTTTACCATGATGAGACAAGGAGCTGGAGCTGGAGCAGGAGGGGGAGGGATGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGACTGTTCCCATTTGAGGTGTAGGACTTGTTGCAAGAGTCGAGGGTTTCAGTGTCAAACCCATGTCAAAAGTACTTGGGTTCCCGCTGCCAAGCGTCGCGAACGCCAGCAACATCGTCAACAAATCGTCCACCATCACCATCAACAACAACTCCGAACAGATCAGTCGTCGGATCAGACTACACCCAAACGACATAGAGAAAATCAGCCATCTCTTGCTCCTGCTGCTACTTCAGGGTTAGAACTTGCACATTTTCCAGCTGAGTTCAATTCCCCAGCTGTTTTCCGGTGCGTCAAAGTCAGTGCCTTTGACAATGTAGAAGAACAATTAGCATATCAAACAGCTGTGAACATTGGTGGCCATATGTTCAAAGGCATTCTCTACGACCAAGGTCCCGAAAGCAGCACCGGCGGCGAGAGCTCGTATTGCCACGGCGGAGATGACGGCGGGCAAGGCCTGGATCTGGTGATCGGAGCATCCAACGGCGGCGGGAGAGTTAACCAATCAACCCCATTTGTGGAGTCTTCATTGTATCCCATCCCAATCAACACATTCACCACCGGTACGCAATTTTTCCCTTCCTCACGAACATAA 942 48.09 MTGLFYLGGKQEEDQEERGREQQLFLYSRNNEEIYSKGLEIWPQYAQNHHHHQQQQQNMENYISFGVGPSRRSLMMNGSDHEFVSRSGFTMMRQGAGAGAGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHRQQIVHHHHQQQLRTDQSSDQTTPKRHRENQPSLAPAATSGLELAHFPAEFNSPAVFRCVKVSAFDNVEEQLAYQTAVNIGGHMFKGILYDQGPESSTGGESSYCHGGDDGGQGLDLVIGASNGGGRVNQSTPFVESSLYPIPINTFTTGTQFFPSSRT 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46902117 46904007 - Maker00007063 Lcy9g2234 643350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2234 313 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 307 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Lcy9g2234 313 MobiDBLite consensus disorder prediction 148 189 - -
Lcy9g2234 313 MobiDBLite consensus disorder prediction 1 21 - -
Lcy9g2234 313 Pfam Domain of unknown function (DUF702) 104 249 - -
Lcy9g2234 313 MobiDBLite consensus disorder prediction 163 181 - -
Lcy9g2234 313 NCBIfam putative zinc finger domain, LRP1 type 106 148 IPR006510 -
Lcy9g2234 313 NCBIfam LRP1 C-terminal domain 200 248 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0702 Lcy-Chr7:6603538 Lcy9g2234 Lcy-Chr9:46902117 7.76E-26 dispersed
Lcy8g2063 Lcy-Chr8:46835235 Lcy9g2234 Lcy-Chr9:46902117 3.21E-34 dispersed
Lcy1g0659 Lcy-Chr1:5659488 Lcy9g2234 Lcy-Chr9:46902117 6.09E-62 wgd
Lcy13g1937 Lcy-Chr13:38393571 Lcy9g2234 Lcy-Chr9:46902117 4.24E-90 wgd
Lcy6g0938 Lcy-Chr6:9560265 Lcy9g2234 Lcy-Chr9:46902117 1.05E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20731 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2234 K27807 - csv:101220654 412.92