Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2234 | ATGACGGGGTTGTTCTATTTAGGTGGGAAACAAGAGGAAGATCAAGAAGAAAGAGGAAGAGAACAGCAATTGTTTTTATACAGTAGAAACAACGAAGAGATCTACTCCAAAGGGTTGGAGATATGGCCACAGTATGCCCAGAATCATCACCATCATCAGCAGCAGCAGCAAAATATGGAGAATTACATTTCCTTTGGAGTGGGGCCTAGTAGGAGGAGCTTGATGATGAACGGCTCTGATCATGAGTTTGTTTCGAGATCAGGGTTTACCATGATGAGACAAGGAGCTGGAGCTGGAGCAGGAGGGGGAGGGATGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGACTGTTCCCATTTGAGGTGTAGGACTTGTTGCAAGAGTCGAGGGTTTCAGTGTCAAACCCATGTCAAAAGTACTTGGGTTCCCGCTGCCAAGCGTCGCGAACGCCAGCAACATCGTCAACAAATCGTCCACCATCACCATCAACAACAACTCCGAACAGATCAGTCGTCGGATCAGACTACACCCAAACGACATAGAGAAAATCAGCCATCTCTTGCTCCTGCTGCTACTTCAGGGTTAGAACTTGCACATTTTCCAGCTGAGTTCAATTCCCCAGCTGTTTTCCGGTGCGTCAAAGTCAGTGCCTTTGACAATGTAGAAGAACAATTAGCATATCAAACAGCTGTGAACATTGGTGGCCATATGTTCAAAGGCATTCTCTACGACCAAGGTCCCGAAAGCAGCACCGGCGGCGAGAGCTCGTATTGCCACGGCGGAGATGACGGCGGGCAAGGCCTGGATCTGGTGATCGGAGCATCCAACGGCGGCGGGAGAGTTAACCAATCAACCCCATTTGTGGAGTCTTCATTGTATCCCATCCCAATCAACACATTCACCACCGGTACGCAATTTTTCCCTTCCTCACGAACATAA | 942 | 48.09 | MTGLFYLGGKQEEDQEERGREQQLFLYSRNNEEIYSKGLEIWPQYAQNHHHHQQQQQNMENYISFGVGPSRRSLMMNGSDHEFVSRSGFTMMRQGAGAGAGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHRQQIVHHHHQQQLRTDQSSDQTTPKRHRENQPSLAPAATSGLELAHFPAEFNSPAVFRCVKVSAFDNVEEQLAYQTAVNIGGHMFKGILYDQGPESSTGGESSYCHGGDDGGQGLDLVIGASNGGGRVNQSTPFVESSLYPIPINTFTTGTQFFPSSRT | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 46902117 | 46904007 | - | Maker00007063 | Lcy9g2234 | 643350 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2234 | 313 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 307 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Lcy9g2234 | 313 | MobiDBLite | consensus disorder prediction | 148 | 189 | - | - | |
Lcy9g2234 | 313 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Lcy9g2234 | 313 | Pfam | Domain of unknown function (DUF702) | 104 | 249 | - | - | |
Lcy9g2234 | 313 | MobiDBLite | consensus disorder prediction | 163 | 181 | - | - | |
Lcy9g2234 | 313 | NCBIfam | putative zinc finger domain, LRP1 type | 106 | 148 | IPR006510 | - | |
Lcy9g2234 | 313 | NCBIfam | LRP1 C-terminal domain | 200 | 248 | IPR006511 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy7g0702 | Lcy-Chr7:6603538 | Lcy9g2234 | Lcy-Chr9:46902117 | 7.76E-26 | dispersed | |
Lcy8g2063 | Lcy-Chr8:46835235 | Lcy9g2234 | Lcy-Chr9:46902117 | 3.21E-34 | dispersed | |
Lcy1g0659 | Lcy-Chr1:5659488 | Lcy9g2234 | Lcy-Chr9:46902117 | 6.09E-62 | wgd | |
Lcy13g1937 | Lcy-Chr13:38393571 | Lcy9g2234 | Lcy-Chr9:46902117 | 4.24E-90 | wgd | |
Lcy6g0938 | Lcy-Chr6:9560265 | Lcy9g2234 | Lcy-Chr9:46902117 | 1.05E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20731 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g2234 | K27807 | - | csv:101220654 | 412.92 |