Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2236 ATGGCGCGAGGGAAGATCCAGATCAAGCGAATCGAAAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGCCGCAACGGCCTCTTCAAAAAGGCCAACGAACTCACCGTCCTCTGCGACGCTAAAGTCTCCATTATCATGTTCTCCAGCACCGGCAAACTCCATGAATACATCAGCCCTGCAACTTCGACCAAGGAGCTGTTCGATCAGTACCAGAAGACTCTAGGCGTTGATCTATGGATCACTCACTACGAGAGAATGCAAGAGAATCTAAAGAAGCTCAAGGATGTGAACCGAAATCTCCGGAGGCAGATTAGGCAGAGGATGGGGGAATGTATGAATGATCTGAGCTTTGAGGAGCTGCGCTGCCTTGAGCAAGATATGGATAATGCTGTAAGGATTATCCGTGAACGCAAGTACCGGGTGATATCAACCCAGATAGAAACACACAAGAGAAAGTTAAAGAGTGTAGGAGAAATACACAAGAGTCTTCTTCAAGCGTTTGATATTGCAACAGAGGAAGATCCACACTACGGATTGGTGGACAATGGAGGAGTAGGAGGAGATTATAATTCAATGATGGGATTCTCAGGCGCTGGGCCTCGCATTTTTGCCCTTCGCCTCCAGTCCAACCACCCTAATATTCACCACGCCCCTCCTCCAGATCTCACAACTTACCCACTCCTCGAGTAG 693 48.77 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWITHYERMQENLKKLKDVNRNLRRQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISTQIETHKRKLKSVGEIHKSLLQAFDIATEEDPHYGLVDNGGVGGDYNSMMGFSGAGPRIFALRLQSNHPNIHHAPPPDLTTYPLLE 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46915463 46918908 + Maker00007114 Lcy9g2236 643352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2236 230 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g2236 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g2236 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g2236 230 Pfam K-box region 82 167 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy9g2236 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 166 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy9g2236 230 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy9g2236 230 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy9g2236 230 FunFam MADS-box transcription factor 16 13 97 - -
Lcy9g2236 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g2236 230 Gene3D - 13 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g2236 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g2236 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g2236 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g2236 230 Coils Coil 84 111 - -
Lcy9g2236 230 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1539 Lcy-Chr9:40485123 Lcy9g2236 Lcy-Chr9:46915463 4.20E-41 dispersed
Lcy9g2236 Lcy-Chr9:46915463 Lcy1g0239 Lcy-Chr1:2165279 6.59E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20732 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2236 K09264 - csv:101218008 419.468