Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2249 ATGGGCTCTGTGGAAGAGAAGCTCAAGACAACTGGGGGTTTGATTAATAACGGGTCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATAAACTCCGAGCTATGGCACGCTTGTGCTGGTCCTCTTGTTTCCTTGCCCCATGTGGGGAGTCTCGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAACTATCCAAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTATGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCCTAGTTCCGGACTTTGGACTAAGGCCGAGTAAACACCCAAACGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACCAGCACACATGGTGGATTCTCAGTGCCACGCAGGGCTGCTGAAAAACTCTTTCCTGCATTGGATTACACAATGCAACCTCCAACTCAGGAGCTCGTTGTCCGAGACTTGCATGACAATACCTGGACTTTCCGCCACATATATCGCGGGCAGCCGAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGGGCAAAGAGACTTAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAAAAATCCCAGTTGCTCATCGGAGTGAGGCGTGCTAACCGGCAACAAACAACTTTGCCATCATCGGTTCTATCTGCTGATAGTATGCATATTGGGGTTCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGGAGTCCATTCACAATCTTTTACAACCCCAGGGCATGCCCTTCAGAGTTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTCGGTATGATGTTTGAAACAGAAGAGTCGGGTAAACGCCGATATATGGGTACAATTGTTGGAATCAGCGATTTAGATCCACTTAGGTGGCCAGGATCCAAGTGGCGAAATCTTCAGGTGGAGTGGGATGAGCCAGGGTGCTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTCTTCATTTTTCCTTCTCTGACTTCGGGTCTAAAACGTCCATTACACGGTGGATTTTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATGTACGTGGGGATCTTTCATACGCTGGGCCAACTCTATGCTCCGAGCCACTGATGAAGATGCTACTGAGGCCTCAACTGGTTAACCTTCACGGAGCCACCTTACAGCAGGATTCAGTTAACAATTTAGTTAAGTTACAGGACATGAAGGGCATGCAGCCAGTAACCAATCCCAAAATGCAGCCGCAGCAGCAGCAGCTTATATCGTCAGAAACTGCATCTCCTCAGAATCAAAATCATCATCCAGTACCTACGCCATCTGATCCCATAAACTCAAATTCATCACCAAAAGAAAGTCTACCAGGAAAAGTACACCCTCCTTCGGCCATCGAAAGTGAAACTCCAACTGGAGTTGATGTAGACAAGGCAAAATATGAACGCGATATTTCAAACAACCAGTCTAATCCATTGCCCCCGGTTGGAGATTGTGGGGAGGAAAAACTCACCGGTAACGATGTAAATATGCAGACACTTGTGAACCAGCTTTCATTTGTGAACCAGAATCAGATCCCCATGCAGTTGCAATCCGTATCATGGCCCATGCAGCCTCAGCTGGAGTCACTAATCCAACACCCACAACCAATTGACATGCCTCAGCCTGAATTTACGAATTCAAATGGTTTGATTTCATCCCTGGATGGCGATGGATGTTTGATTAACCCAGCCTGTCTACCCCTTCCTGGAGTGATGAGGTCGCCAGGGAATTTTTCTATGTTGGGATTGCAAGACTCCTCAACAGTGTTTCCCGAGGCTCTTAATTTTCCCTTGCCCTCTACGGGTCAAGACATGTGGGATCCTCTAAATAATATGAGGTTCTCATCTCAAACCAATCATCTCGTCTCATTCTCCCATCCAGACGCATCTAACCTGAACTGTATGGCTAATGCAAATGTTATGAGAGATGTTTCAGATGAGAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACATTGAAATCAGTAACGGTGGAAGCACTTTGGTTGATCCTGCTGTTTCAAGCACCATTCTTGATGATTATTGCACATTGAAAGATGCCGATTTCCCACACCCTACAGATTGCTTGGCTGGGAACTTCAGTTCTAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTAGTCTGGGAGATTCTCAAGCTTTCTCCAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCATGCAATGTGGATTTTGATGATGGCAGTCTTCTGCAGAATGGTTCATGGAAGCAAGTAGTACCACCCATGAGAACTTACACGAAGGTCCAGAAGGCGGGATCTGTTGGGAGATCTATTGATGTCACAAGTTTTAAGAACTACGACGAACTATGCTCTGCTATAGAATGTATGTTTGGACTTGAAGGGCTGCTTAATGACCCAAGAGGCTCAGGATGGAAACTGGTTTATGTGGATTATGAGAACGACGTCTTGCTTATTGGTGATGATCCCTGGGAGGAATTTGTTAGCTGCGTACGGTGTATCAGAATCTTGTCACCTTCGGAAGTTCAGCAAATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATCAATTGCTCCATGTCAGAAGGTGGCCGAGCTTAA 2862 45.88 MGSVEEKLKTTGGLINNGSQTNLLDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPALDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENVRGDLSYAGPTLCSEPLMKMLLRPQLVNLHGATLQQDSVNNLVKLQDMKGMQPVTNPKMQPQQQQLISSETASPQNQNHHPVPTPSDPINSNSSPKESLPGKVHPPSAIESETPTGVDVDKAKYERDISNNQSNPLPPVGDCGEEKLTGNDVNMQTLVNQLSFVNQNQIPMQLQSVSWPMQPQLESLIQHPQPIDMPQPEFTNSNGLISSLDGDGCLINPACLPLPGVMRSPGNFSMLGLQDSSTVFPEALNFPLPSTGQDMWDPLNNMRFSSQTNHLVSFSHPDASNLNCMANANVMRDVSDESNNQSGIYSCSNIEISNGGSTLVDPAVSSTILDDYCTLKDADFPHPTDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDDGSLLQNGSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCSMSEGGRA 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47000188 47006140 - Maker00007128 Lcy9g2249 643365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2249 953 SUPERFAMILY CAD & PB1 domains 837 918 - -
Lcy9g2249 953 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677(InterPro)
Lcy9g2249 953 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 931 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy9g2249 953 FunFam Auxin response factor 835 928 - -
Lcy9g2249 953 FunFam Auxin response factor 313 385 - -
Lcy9g2249 953 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677(InterPro)
Lcy9g2249 953 Pfam Auxin response factor 275 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy9g2249 953 Gene3D - 147 250 IPR015300 -
Lcy9g2249 953 MobiDBLite consensus disorder prediction 474 541 - -
Lcy9g2249 953 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Lcy9g2249 953 SMART B3_2 149 251 IPR003340 GO:0003677(InterPro)
Lcy9g2249 953 Gene3D - 313 385 - -
Lcy9g2249 953 FunFam Auxin response factor 147 251 - -
Lcy9g2249 953 MobiDBLite consensus disorder prediction 475 520 - -
Lcy9g2249 953 Pfam AUX/IAA family 884 927 IPR033389 -
Lcy9g2249 953 CDD B3_DNA 148 249 IPR003340 GO:0003677(InterPro)
Lcy9g2249 953 ProSiteProfiles PB1 domain profile. 839 923 IPR053793 -
Lcy9g2249 953 Gene3D - 836 928 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0151 Lcy-Chr1:1404121 Lcy9g2249 Lcy-Chr9:47000188 9.29E-150 dispersed
Lcy8g1889 Lcy-Chr8:45166309 Lcy9g2249 Lcy-Chr9:47000188 1.90E-71 dispersed
Lcy8g1907 Lcy-Chr8:45332279 Lcy9g2249 Lcy-Chr9:47000188 9.22E-74 dispersed
Lcy9g2249 Lcy-Chr9:47000188 Lcy5g1695 Lcy-Chr5:39392044 8.36E-199 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20734 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2249 K14486 - csv:101216825 1798.48