Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g2251 | ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGCCACATTGTCAGGCTCCGGCAAATGCTCCGACGGTGGCGCAACAAGGCCCGAATGTCCGCCAATCGCATCCCCTCCGACGTACCAGCCGGACACGTAGCCGTCTGCGTCGGAACCAGCTGCCGGCGGTTCGTCGTCCGGGCCACTTACTTGAACCACCCGGTTTTCAAGAAGCTTCTGGTTCAAGCCGAAGAGGAGTACGGGTTCACCAATCAAGGCCCTTTGGCAATCCCCTGCGACGAGTCGGTTTTCGAAGAAGTGATCCGGTTCATATCCAGATCCGAGTCGCCGAACTCGGGCCGGTTCATGAAATTGGACGATTTTCAGAGTTACTGCCATATCGGAATCAGAACCGGGCTGGATTTATGGCCGGAATCCCGGCCTTTGCTTCATGGGTTAGCCGAGAAATCAATCTGA | 450 | 56.22 | MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSESPNSGRFMKLDDFQSYCHIGIRTGLDLWPESRPLLHGLAEKSI | 149 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 47027801 | 47028727 | + | Maker00007040 | Lcy9g2251 | 643367 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g2251 | 149 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 17 | 101 | IPR003676 | GO:0009733(InterPro) | |
| Lcy9g2251 | 149 | Pfam | Auxin responsive protein | 16 | 102 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy9g1752 | Lcy-Chr9:42724008 | Lcy9g2251 | Lcy-Chr9:47027801 | 1.22E-17 | dispersed | |
| Lcy3g0944 | Lcy-Chr3:32870227 | Lcy9g2251 | Lcy-Chr9:47027801 | 4.91E-64 | transposed | |
| Lcy3g2326 | Lcy-Chr3:50133264 | Lcy9g2251 | Lcy-Chr9:47027801 | 5.06E-22 | transposed | |
| Lcy8g1182 | Lcy-Chr8:38272764 | Lcy9g2251 | Lcy-Chr9:47027801 | 8.32E-61 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g2251 | K14488 | - | csv:101216342 | 301.982 |