Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2251 ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGCCACATTGTCAGGCTCCGGCAAATGCTCCGACGGTGGCGCAACAAGGCCCGAATGTCCGCCAATCGCATCCCCTCCGACGTACCAGCCGGACACGTAGCCGTCTGCGTCGGAACCAGCTGCCGGCGGTTCGTCGTCCGGGCCACTTACTTGAACCACCCGGTTTTCAAGAAGCTTCTGGTTCAAGCCGAAGAGGAGTACGGGTTCACCAATCAAGGCCCTTTGGCAATCCCCTGCGACGAGTCGGTTTTCGAAGAAGTGATCCGGTTCATATCCAGATCCGAGTCGCCGAACTCGGGCCGGTTCATGAAATTGGACGATTTTCAGAGTTACTGCCATATCGGAATCAGAACCGGGCTGGATTTATGGCCGGAATCCCGGCCTTTGCTTCATGGGTTAGCCGAGAAATCAATCTGA 450 56.22 MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSESPNSGRFMKLDDFQSYCHIGIRTGLDLWPESRPLLHGLAEKSI 149
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 47027801 47028727 + Maker00007040 Lcy9g2251 643367
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2251 149 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 17 101 IPR003676 GO:0009733(InterPro)
Lcy9g2251 149 Pfam Auxin responsive protein 16 102 IPR003676 GO:0009733(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1752 Lcy-Chr9:42724008 Lcy9g2251 Lcy-Chr9:47027801 1.22E-17 dispersed
Lcy3g0944 Lcy-Chr3:32870227 Lcy9g2251 Lcy-Chr9:47027801 4.91E-64 transposed
Lcy3g2326 Lcy-Chr3:50133264 Lcy9g2251 Lcy-Chr9:47027801 5.06E-22 transposed
Lcy8g1182 Lcy-Chr8:38272764 Lcy9g2251 Lcy-Chr9:47027801 8.32E-61 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2251 K14488 - csv:101216342 301.982