Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2259 ATGGCTCTCTTAACTTCCTTGGCAGAGCCCTCTGAGCAAAAGAAACCCCTCAACAATAAACGCAGAAAAAAGCACCAAAAGCCAACCCCGTCACCGCCACCGCCGTCCTCCGCCCAATCCTCATGGGACCAAATCAAGAATCTCATCACCTGCAAACAGGTCGAGGTTTCGAGAGTTCATGAGCCGGCGAAACGCTCGCCGGCGTATTCGAAGTTGGGGTCTTCATGCAGTTCCATTTGTAGTTTCAGAGACGTGGTCCATGGCAATGCCAAAGTTGTACACCGAGCCGACAACTCACCGGAAAGCAGCTCCGTCGGACAGGAAACTAGGTTACTCAGTAGAAAAGCTGCAAACGGTTCGTCGTCTCGTTCTTTGACGGCACCGGCGCCGACGAGAACGAAAAACGGTGCGTCTGGTTCGTACTCCTCGTCTTCGAGAGGAATACAATTGCGAAAGCTTTCTGGGTGTTATGAATGTCACACCATCGTTGACCCTAGCAGGTACCCAGTTCCGAGGAGTTCTATATGTCCTTGTCCTCAATGTGGAGAGGTCTTCCCCAAGATTGAAAGCTTAGAGCTTCACCAAGCAGTTCGCCATGCTGTTTCCGAGTTGGGTCCTGACGATTCGGGTCGAAATATTGTGGAGATAATTTTCAAGTCAAGCTGGCTAAAAAAGGACCGCCCCATTTGCAAGATCCAACGGATATTGAAGGTCCACAACACCCAACGCACCATCCAACGCTTCGAGGACTGCCGCGATGCAGTCAAGACACGTGCGCTCGCCAGCACCAGAAAAAACCCGCGCTGTGCGGCCGACGGTAATGAGCTGTTGCGCTTCCACTGTAGCGCCTTGTTGTGCGACCTCGGCTCACGTGGCTCGACCGGCTTGTGCGGCTCCATTCCTGGCTGCGGCGTCTGCAGCGTCATCCGCCATGGATTCCAGTGCAAGCCTGGTGGGACCGCCGGCGTACGGACTACTGCCAGTAGTGGTAGGGCCCACGATTCCTTCGAATGCGGCGACGGGCGACGGCGGGCGATGTTGGTGTGCCGTGTCATCGCCGGGAGAGTGAAGCGGATCGCTGAGGATACGGCGGCGGTGCCGGTGCCGGTGGAGGAGGAGAATTTGTCGGCGGCGGCATCGTACGACTCCGTTTCGCGACACTCGGGGATGTACTCGAATCTCGAGGAGTTGATCATTTTCAATCCGAAGGCTATCCTTCCTTGTTTCGTCGTCATCTACGAAGCGCTCCAAACCTAA 1257 55.29 MALLTSLAEPSEQKKPLNNKRRKKHQKPTPSPPPPSSAQSSWDQIKNLITCKQVEVSRVHEPAKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLSRKAANGSSSRSLTAPAPTRTKNGASGSYSSSSRGIQLRKLSGCYECHTIVDPSRYPVPRSSICPCPQCGEVFPKIESLELHQAVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIQRILKVHNTQRTIQRFEDCRDAVKTRALASTRKNPRCAADGNELLRFHCSALLCDLGSRGSTGLCGSIPGCGVCSVIRHGFQCKPGGTAGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRIAEDTAAVPVPVEEENLSAAASYDSVSRHSGMYSNLEELIIFNPKAILPCFVVIYEALQT 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47104776 47107586 + Maker00007051 Lcy9g2259 643375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2259 418 Gene3D - 200 415 - -
Lcy9g2259 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 204 IPR013087 -
Lcy9g2259 418 FunFam C2H2-like zinc finger protein 200 414 - -
Lcy9g2259 418 ProSitePatterns Zinc finger C2H2 type domain signature. 176 199 IPR013087 -
Lcy9g2259 418 MobiDBLite consensus disorder prediction 93 144 - -
Lcy9g2259 418 MobiDBLite consensus disorder prediction 96 144 - -
Lcy9g2259 418 MobiDBLite consensus disorder prediction 1 41 - -
Lcy9g2259 418 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 40 413 - -
Lcy9g2259 418 SUPERFAMILY ADP-ribosylation 201 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1194 Lcy-Chr10:34602364 Lcy9g2259 Lcy-Chr9:47104776 3.53E-104 dispersed
Lcy8g1763 Lcy-Chr8:44109953 Lcy9g2259 Lcy-Chr9:47104776 3.34E-60 dispersed
Lcy9g1232 Lcy-Chr9:36782845 Lcy9g2259 Lcy-Chr9:47104776 4.82E-57 dispersed
Lcy9g2259 Lcy-Chr9:47104776 Lcy6g1271 Lcy-Chr6:15869757 1.11E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20735 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2259 - - - 0.0