Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2273 ATGGCTGCTCAAATTTCATTCATATTCTATCTCCTCACCATCCAAATTTCAATATCAGGAGTATTATCCACGACTTTCAGCATAGTAAACAAATGTGATTACACAGTTTGGCCGGGAATTCTCACCAACGCCGGAGTTCCACCACTTCCGACTACCGGCTTCGTCCTCGCCTCCGGCGAGTCCAAGACACTCTCCGCTCCGGCGTCTTGGGGCGGCCGGTTCTGGGGCCGGACCCACTGCACACAAGACTCCACCGGGAAATTCTCCTGCCTCACCGGCGACTGCGGCTCCGACAAGGTGGAGTGCAGCGGAAACGGCGCGAAGCCGCCGGCAACTCTGGCGGAGTTCACCCTCGACGGCGCTGGCGGGCTGGATTTCTTCGACGTGAGTTTGGTCGACGGTTACAACACCCCTATGCTGGTCGTCCCACAGGGAGGCACCGGCGAGAAATGTATGAGCACAGGGTGCGTTGTGGATTTGAACGGCGCGTGTCCTTCAGAGCTCAAGGTGACGAGCGTGGACGGCGGACAGAACGTCGCGTGTAAAAGCGCGTGTGAAGCGTTTAACCAACCGCAATTCTGTTGCAGTGGCGCGTACGGAACTCCCGATACTTGCAAACCCTCTCCCTACTCCCAGGCGTTTAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGACGATTTAACCAGCACGTTTACATGTCTGGACGCCGATTATATCATCACATTTTGCCCCTCACCCAACACTAGTCAGAAATCAACGGAAGATCACAACACGGAAGGCCACAACACAAATACGCCGGCGATCAACGGCGGCAACGGCACCATGGTTTACGAAGGGGCTGCTTTCGATCTAAGCGGCGCGTCGAGAACCACGCTCCGCCATATTCTTGGCGTGGTCGTTGCCACGGTGGCAATTCTTCAAAGTCGGCAACTCTTTTGA 945 55.77 MAAQISFIFYLLTIQISISGVLSTTFSIVNKCDYTVWPGILTNAGVPPLPTTGFVLASGESKTLSAPASWGGRFWGRTHCTQDSTGKFSCLTGDCGSDKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNTPMLVVPQGGTGEKCMSTGCVVDLNGACPSELKVTSVDGGQNVACKSACEAFNQPQFCCSGAYGTPDTCKPSPYSQAFKNACPRAYSYAYDDLTSTFTCLDADYIITFCPSPNTSQKSTEDHNTEGHNTNTPAINGGNGTMVYEGAAFDLSGASRTTLRHILGVVVATVAILQSRQLF 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47171367 47173019 + Maker00007077 Lcy9g2273 643389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2273 314 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Lcy9g2273 314 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Lcy9g2273 314 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Lcy9g2273 314 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Lcy9g2273 314 SMART tha2 26 246 IPR001938 -
Lcy9g2273 314 Pfam Thaumatin family 30 246 IPR001938 -
Lcy9g2273 314 PANTHER OS03G0233200 PROTEIN 7 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Lcy9g2273 314 MobiDBLite consensus disorder prediction 252 271 - -
Lcy9g2273 314 PIRSF PR5 1 285 IPR001938 -
Lcy9g2273 314 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Lcy9g2273 314 Gene3D Thaumatin 24 246 IPR037176 -
Lcy9g2273 314 SUPERFAMILY Osmotin, thaumatin-like protein 24 247 IPR037176 -
Lcy9g2273 314 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Lcy9g2273 314 CDD TLP-PA 25 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1907 Lcy-Chr13:38017119 Lcy9g2273 Lcy-Chr9:47171367 1.83E-147 dispersed
Lcy8g1240 Lcy-Chr8:38935845 Lcy9g2273 Lcy-Chr9:47171367 3.99E-120 dispersed
Lcy8g1242 Lcy-Chr8:38948808 Lcy9g2273 Lcy-Chr9:47171367 2.50E-100 dispersed
Lcy9g0509 Lcy-Chr9:15545685 Lcy9g2273 Lcy-Chr9:47171367 3.07E-73 dispersed
Lcy1g0624 Lcy-Chr1:5344388 Lcy9g2273 Lcy-Chr9:47171367 2.25E-103 wgd
Lcy13g1906 Lcy-Chr13:38004040 Lcy9g2273 Lcy-Chr9:47171367 3.55E-90 wgd
Lcy6g2309 Lcy-Chr6:47837388 Lcy9g2273 Lcy-Chr9:47171367 6.79E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2273 - - - 0.0