Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2275 ATGAGGAAAAGATCGCTTCATCCTGCTCTCTGTAATTTCTTTATCTTCTTCTTTTTACTTCTCTTCTCTGCTTGTTTTTGCTTCGCCAATCGCGAGATGGAAGCTCTGTTGAAGATGAAGACCGCCATGATCGTACCGGGGAGGTCAGGCCTCAGTGATTGGGAGCCATCGTCGTCGCCAGATGCTCATTGTGCCTTCTCTGGAGTTTCGTGCGATGGCGATTATAGAGTTGTTGCGCTTAACGTCTCGAATTTCCGTCTGTTTGGCCGGATTCCGCCGGAGATTGGCATGTTGGAGAAGCTTGTGAACTTGACGTTAGTGAACAACAATCTCACTGGACGGCTTCCTCTCGAAATGGCGAAACTCACGTCGCTTAAGATTCTCAATCTCTCTAACAACGTCTTTCATGATAATTTACCGGCGGAAATCACTCTCGCAATGACGGAACTCGAGGTTTTCGATATCTATAACAACAATTTCAGTGGACCGCTTCCGGTGGAGTTCGCCAAGTTGAAGAACATTAAGTATCTTGACCTCGGCGGATGCTTCTTTACCGATCAGATTCCGGAGGTTTACTCCAAGATGCAGACGTTGGAGGTCTTAAGTCTGAGGGGTAATGCGCTTACTGGTAGAATTCCGGCTAGTTTGGCGCGGTTGAAGAATCTTAGGTATCTTTACGCCGGTTATTTTAACCATTACGATGGCGGAATTCCGCCCGAGTTTGGATCGTTGAGTTCTCTCGAGCTTCTCGATTTAGCCAACTGTAATCTCTCCGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACTTACACAGTCTATTTCTACAAGTAAACAATCTTACCGGTCGGATTCCCTCAGAACTTTCCGGTTTAGTTAGCCTTAAGTCATTGGACCTCTCGCTGAACGAACTCACCGGAGAGATACCGGCAAGTTTCGCGGCACTGCAGAACATTACTCTGATCAATTTATTCAGCAACAAACTTCACGGTCCAATTCCTGGTTTCGTCGGTGACTTTCCGTTTCTCGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGTTAGAGCTCCCCGAGAATCTCGGGCGTAACGGAAAACTGTTTCTGCTCGACGTGGCTACAAATCACCTAACTGGGCTCATTCCCCCGGATATATGTAATGGTAGGTTGAAGACTTTGATTCTGTTGGATAATTACTTCTTTGGGCCCATCCCTGAAAAATTAGGCCAGTGCGATTCGCTTACGAAAATCAGAATTGCGGGGAATTTCTTCAATGGAACTGTTCCGGCGGGGTTTTTCAACTTTCCGGCGTTGGAGATGCTCGATATCAGTAATAATTACTTCTCGGGCGCTCTTCCGTCGCACATGTCGGGCGAGTCCCTTGGAAGTTTACTGCTCAGTAACAACCACATCACCGGAGAAATTCCGGCGGCGATTAAGAATTTAGAAAACTTGCAGGTTCTTTCTCTGGAACATAACCAATTCACTGGTCATTTACCTGTACAAATATTTGAATTGAATAAGTTGCTGAAGATCAACATCAGCTTCAACAACATTAGCGGCGAAATTCCACATTCGGTCGTTGAGTGCACGTCTTTAACGTCAATTGATCTCAGTGAAAACTACCTCGTTGGCCAACTTCCCAAAGGAATTTCGTATCTAAAAATCTTGAGCGTCCTCAATTTGTCAAGAAATCAACTGACGGGCCAAATTCCGAATGAAATTCGGTCGATGATGAGTCTTACAACTCTGGATTTGTCATACAACAACTTCTTTGGTAGAATCCCCACCGGCGGTCAGTTTTCGGTATTCAACGTCAGCGCATTCGCCGGGAACCCAAACCTCTGTTTCCCCAACCACGGGCCTTGCGCATCGCTGCACAGCAATTTGAAATCCATTAAGCTAATCATCCCAATCGTTGCGATATTCATCATTCTTTTATGTGTACTCGCCGGAATTTACATCAGGAAGAGAAAGAGGATTCAGAAATCAAAGGCATGGAAACTCACGGCGTTCCAACGCCTGAATTTCAAAGCGGAGGACGTCCTCGAGTGCTTGAAGGAAGAAAATATCATCGGCAAAGGCGGCGCCGGCGTCGTCTACCGTGGATCTATGCCGGACGGCTCCATCGTGGCGATCAAACTGTTGCTAGGAAGTGGCCGGAACGACCACGGTTTCTCAGCCGAAATTCAGACTCTTGGGCGAATCAAGCACCGCAACATCGTCAGGCTCTTGGGGTACGTGTCGAACAGAGACACGAATCTGCTGCTGTACGAGTATATGCCCAATGGGAGCCTGGACCAGCGGCTGCATGGAGTGAAGGGCGGGCATCTGCACTGGGACTTGCGGTACAAGATCGCGATGGAAGCCGCCAAGGGGCTCTGTTACTTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAATATACTGCTGGATAAGTTCTTTGAGGCGCATGTCTCTGACTTTGGGCTAGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTATGGCTACATCGCTCCAGAATACGCCTACACACTGAAAGTGGACGAGAAGAGCGACGTGTACAGTTTCGGTGTCGTACTGCTAGAACTGATAGCCGGGAGAAAGCCAGTGGGCGATTTTGGCGAAGGCGTGGACATTGTCAGGTGGGTCCTAAAAACCACATCAGAACTCTCTCAGCCGTCCGATGCAGCCTCAGTATTAGCCGTGGTGGACTCGCGCCTCACCGAATACCCTCTCCAAGATGTCATCCACCTCTTCAAAATAGCCATGATGTGCGTTGAAGAAGACAGCTCTGCAAGGCCAACCATGAGGGAAGTCGTCCACATGCTATCAAATCCCCCAAGGTCTGCCCCTACTCTCATCAACCTTTGA 2919 48.34 MRKRSLHPALCNFFIFFFLLLFSACFCFANREMEALLKMKTAMIVPGRSGLSDWEPSSSPDAHCAFSGVSCDGDYRVVALNVSNFRLFGRIPPEIGMLEKLVNLTLVNNNLTGRLPLEMAKLTSLKILNLSNNVFHDNLPAEITLAMTELEVFDIYNNNFSGPLPVEFAKLKNIKYLDLGGCFFTDQIPEVYSKMQTLEVLSLRGNALTGRIPASLARLKNLRYLYAGYFNHYDGGIPPEFGSLSSLELLDLANCNLSGEIPPSLGNLKHLHSLFLQVNNLTGRIPSELSGLVSLKSLDLSLNELTGEIPASFAALQNITLINLFSNKLHGPIPGFVGDFPFLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDICNGRLKTLILLDNYFFGPIPEKLGQCDSLTKIRIAGNFFNGTVPAGFFNFPALEMLDISNNYFSGALPSHMSGESLGSLLLSNNHITGEIPAAIKNLENLQVLSLEHNQFTGHLPVQIFELNKLLKINISFNNISGEIPHSVVECTSLTSIDLSENYLVGQLPKGISYLKILSVLNLSRNQLTGQIPNEIRSMMSLTTLDLSYNNFFGRIPTGGQFSVFNVSAFAGNPNLCFPNHGPCASLHSNLKSIKLIIPIVAIFIILLCVLAGIYIRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEENIIGKGGAGVVYRGSMPDGSIVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKFFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTTSELSQPSDAASVLAVVDSRLTEYPLQDVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRSAPTLINL 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47182689 47187749 - Maker00007086 Lcy9g2275 643391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2275 972 Gene3D Transferase(Phosphotransferase) domain 1 761 966 - -
Lcy9g2275 972 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515(InterPro)
Lcy9g2275 972 Pfam Leucine rich repeat 532 591 IPR001611 GO:0005515(InterPro)
Lcy9g2275 972 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Lcy9g2275 972 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 232 336 - -
Lcy9g2275 972 Pfam Protein kinase domain 688 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2275 972 FunFam LRR receptor-like serine/threonine-protein kinase EFR 337 628 - -
Lcy9g2275 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g2275 972 Gene3D Ribonuclease Inhibitor 146 231 IPR032675 -
Lcy9g2275 972 Gene3D Ribonuclease Inhibitor 232 336 IPR032675 -
Lcy9g2275 972 Gene3D Ribonuclease Inhibitor 31 145 IPR032675 -
Lcy9g2275 972 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Lcy9g2275 972 SMART serkin_6 686 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2275 972 SUPERFAMILY RNI-like 80 422 - -
Lcy9g2275 972 Gene3D Ribonuclease Inhibitor 337 630 IPR032675 -
Lcy9g2275 972 SMART LRR_typ_2 244 268 IPR003591 -
Lcy9g2275 972 SMART LRR_typ_2 122 146 IPR003591 -
Lcy9g2275 972 SMART LRR_typ_2 554 578 IPR003591 -
Lcy9g2275 972 SMART LRR_typ_2 482 506 IPR003591 -
Lcy9g2275 972 SMART LRR_typ_2 340 364 IPR003591 -
Lcy9g2275 972 SMART LRR_typ_2 195 219 IPR003591 -
Lcy9g2275 972 SMART LRR_typ_2 292 315 IPR003591 -
Lcy9g2275 972 SUPERFAMILY L domain-like 389 621 - -
Lcy9g2275 972 Gene3D Phosphorylase Kinase; domain 1 651 760 - -
Lcy9g2275 972 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 145 231 - -
Lcy9g2275 972 SUPERFAMILY Protein kinase-like (PK-like) 677 959 IPR011009 -
Lcy9g2275 972 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 761 970 - -
Lcy9g2275 972 Pfam Leucine Rich Repeat 150 171 IPR001611 GO:0005515(InterPro)
Lcy9g2275 972 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515(InterPro)
Lcy9g2275 972 Pfam Leucine Rich Repeat 246 268 IPR001611 GO:0005515(InterPro)
Lcy9g2275 972 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515(InterPro)
Lcy9g2275 972 Pfam Leucine Rich Repeat 438 456 IPR001611 GO:0005515(InterPro)
Lcy9g2275 972 ProSiteProfiles Protein kinase domain profile. 686 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2275 972 PANTHER OS04G0122200 PROTEIN 51 144 IPR051809 -
Lcy9g2275 972 FunFam Leucine-rich repeat receptor-like kinase 31 144 - -
Lcy9g2275 972 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 655 760 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1176 Lcy-Chr6:13688637 Lcy9g2275 Lcy-Chr9:47182689 1.28E-134 dispersed
Lcy8g0015 Lcy-Chr8:686630 Lcy9g2275 Lcy-Chr9:47182689 1.34E-40 dispersed
Lcy9g0919 Lcy-Chr9:31005023 Lcy9g2275 Lcy-Chr9:47182689 5.73E-76 dispersed
Lcy9g1075 Lcy-Chr9:34624923 Lcy9g2275 Lcy-Chr9:47182689 5.18E-65 dispersed
Lcy9g1649 Lcy-Chr9:41629593 Lcy9g2275 Lcy-Chr9:47182689 3.07E-71 dispersed
Lcy9g1650 Lcy-Chr9:41654795 Lcy9g2275 Lcy-Chr9:47182689 4.24E-82 dispersed
Lcy9g2275 Lcy-Chr9:47182689 Lcy13g1039 Lcy-Chr13:22711472 3.07E-66 dispersed
Lcy9g2275 Lcy-Chr9:47182689 Lcy1g0870 Lcy-Chr1:7482960 8.87E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66231 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2275 - - - 0.0