Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2283 ATGGCTCAAACGACGCCGAACCACACGCAGACGGTCTCCGGTTGGGCAGCTCATGATTCTTCCGGCAAGATCACTCCATTTACTTTCAAACGCAGAGAAAACGGCCCCGACGACGTGACCATAGAGATTTTGTACTGTGGAATATGCCACACCGATCTTCACTATGCCAAAAACGAGTGGGGCATCACCATGCATGAGATGACAGGGGTGATTTCGAAGGTGGGAAGCAACGTGAAGAAGTTCAAAGTAGGGGACAGAGTGGGAGTTGGCTGTATAGCCGCTTCGTGCTTGAACTGTGAGTTCTGCCAAGATTGCCAAGAGAATTACTGCGAAAGTTTGCAGTTCACATACAACGGAATCTTCTGGGATGGGAGCATAACTTACGGCGGATACTCCAAAATGTTTGTTTCAGATCAGAGGTACGTTGTGCACATACCGGAGAGCCTGCCGATGGACGCGGCGGCGCCGCTGCTGTGCGCTGGGATTACAGTGTTCACGCCGATGAAAGACCTTGATCTGATCGACTCGCCGAGGAAGAAGGTGGGAGTGGTGGGGCTTGGAGGGCTTGGCCACATAGCAGTCAAATTTGCAAAGGCGTTTGGCCACCATGTGACTGTGATCAGCACCTCTGCTTCAAAGGAACGAGAGGCCAAAGAGCGCCTTGGCGCTGACGAGTTCATAGTCAGTAAAGATCCTCAGCAAATGCAGGATAATAGGAGGACGTTGGATTTTATATTGGACACAGTTTCGGCACAGCATTGCGTTGGCGCAATCTTGGAATTGCTGAAAGTAAATGGGACATTGTCCATTGTGGGAGCTCCAGACAAGCCCATCCAATTGCCGTCCTTCCCTCTAATATTTGGGAAAAGGACGGTGAAGGGAAGCATAATAGGTGGAATACAAGAGACTCAAGAGATGATGGACTTGTGTGGAAAGTACAACATTACTAGTGATATTGAGGTTATTAAGCCTGACAACATCAACCATGCTATGGAACGTCTCACCAACAACGATGTACGATACCGATTTGTCATCGACATTGCCCAACAAAAAGCTAAATATTAA 1065 48.73 MAQTTPNHTQTVSGWAAHDSSGKITPFTFKRRENGPDDVTIEILYCGICHTDLHYAKNEWGITMHEMTGVISKVGSNVKKFKVGDRVGVGCIAASCLNCEFCQDCQENYCESLQFTYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDAAAPLLCAGITVFTPMKDLDLIDSPRKKVGVVGLGGLGHIAVKFAKAFGHHVTVISTSASKEREAKERLGADEFIVSKDPQQMQDNRRTLDFILDTVSAQHCVGAILELLKVNGTLSIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKYNITSDIEVIKPDNINHAMERLTNNDVRYRFVIDIAQQKAKY 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47268657 47271591 + Maker00007151 Lcy9g2283 643399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2283 354 FunFam Cinnamyl alcohol dehydrogenase 160 317 - -
Lcy9g2283 354 Pfam Zinc-binding dehydrogenase 188 310 IPR013149 -
Lcy9g2283 354 Gene3D - 160 317 - -
Lcy9g2283 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 149 315 IPR036291 -
Lcy9g2283 354 PANTHER ALDEHYDE REDUCTASE 7 349 IPR047109 GO:0009809(PANTHER)|GO:0016616(PANTHER)|GO:0016616(InterPro)|GO:0045551(PANTHER)
Lcy9g2283 354 SUPERFAMILY GroES-like 7 193 IPR011032 -
Lcy9g2283 354 Gene3D - 15 347 - -
Lcy9g2283 354 CDD CAD1 14 346 IPR047109 GO:0016616(InterPro)
Lcy9g2283 354 Pfam Alcohol dehydrogenase GroES-like domain 35 147 IPR013154 -
Lcy9g2283 354 SMART PKS_ER_names_mod 19 345 IPR020843 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0232 Lcy-Chr8:6158046 Lcy9g2283 Lcy-Chr9:47268657 3.07E-112 dispersed
Lcy9g2283 Lcy-Chr9:47268657 Lcy8g0233 Lcy-Chr8:6209097 4.30E-140 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2283 K00083 - csv:101213170 649.818