Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2296 ATGTCACCGCCGGCGAGGAGCAAGAGCTGGAACGGCGGCGTGGATAAGCATTATCCACCGGCGCTGGCCACCCATGATTCAGTTATTTCCGACCCCATTGCTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGAGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTTTTTAAGTTTTCTCCTACAACGACGAGTGCTTCCTTTGTATTGAGGAAACATTATCTAAGTCTTCTGTACCATTACGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGTTCCTCAAGCGCCATTCCCTTTTGGCAGCCCTACGAGTGAAAACGAATTGGCTCTGGTGGAATATACTCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTTACCGGAACAATTGATGGGAAATTCGACTGTGGTTACCTGGTGACTGTGAAAGTGGGATCTGAGGTTCTGAGAGGAGTGCTTTACCATCCAGAGCAGCCAGCCCCGTCCGATCTACGGCCCGAGTTGACGAACGCCATTGTCCCGTACACCGGTGGCAGACATCGACATTCTGGTCGACGGCACCGGAGAAGCCGGAGAAAGGGAGACCCGAACCACCCGAAACCAAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTGAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTTTACCAAAACATTGGGCTGAAAGACAAGGAAAGATACAGGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGATATTCATGCAGCTAACTATTCAAAACATGGAGAGTAG 975 48.41 MSPPARSKSWNGGVDKHYPPALATHDSVISDPIAFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKVGSEVLRGVLYHPEQPAPSDLRPELTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRQATDIHAANYSKHGE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47361510 47364277 - Maker00007044 Lcy9g2296 643412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2296 324 Gene3D - 26 126 IPR036431 GO:0003677(InterPro)
Lcy9g2296 324 SMART hmgende2 237 306 IPR009071 -
Lcy9g2296 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Lcy9g2296 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Lcy9g2296 324 MobiDBLite consensus disorder prediction 213 244 - -
Lcy9g2296 324 Coils Coil 294 314 - -
Lcy9g2296 324 SUPERFAMILY ARID-like 29 128 IPR036431 GO:0003677(InterPro)
Lcy9g2296 324 MobiDBLite consensus disorder prediction 218 235 - -
Lcy9g2296 324 CDD HMG-box_AtHMGB9-like 238 304 - -
Lcy9g2296 324 Gene3D High mobility group box domain 222 318 IPR036910 -
Lcy9g2296 324 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Lcy9g2296 324 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Lcy9g2296 324 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677(InterPro)
Lcy9g2296 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
Lcy9g2296 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 316 - -
Lcy9g2296 324 SUPERFAMILY HMG-box 235 309 IPR036910 -
Lcy9g2296 324 SMART ARID_2 26 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2296 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0460 Lcy-Chr13:5509030 Lcy9g2296 Lcy-Chr9:47361510 3.21E-81 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g0460 . 174 540 ARID Transcription Factor Family AT1G04880 57.0 5.0e-107 385.6
Lcy9g2358 . 384 628 ARID Transcription Factor Family AT1G20910 50.2 1.2e-64 244.6
Lcy9g2296 . 16 309 ARID Transcription Factor Family AT1G76110 67.4 2.0e-111 399.8
Lcy13g0075 . 2 772 ARID Transcription Factor Family AT3G43240 59.5 3.7e-264 908.3
Lcy3g2277 . 5 396 ARID Transcription Factor Family AT3G43240 53.5 3.2e-114 410.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20736 None None None None Lcy TR