Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2296 ATGTCACCGCCGGCGAGGAGCAAGAGCTGGAACGGCGGCGTGGATAAGCATTATCCACCGGCGCTGGCCACCCATGATTCAGTTATTTCCGACCCCATTGCTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGAGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTTTTTAAGTTTTCTCCTACAACGACGAGTGCTTCCTTTGTATTGAGGAAACATTATCTAAGTCTTCTGTACCATTACGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGTTCCTCAAGCGCCATTCCCTTTTGGCAGCCCTACGAGTGAAAACGAATTGGCTCTGGTGGAATATACTCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTTACCGGAACAATTGATGGGAAATTCGACTGTGGTTACCTGGTGACTGTGAAAGTGGGATCTGAGGTTCTGAGAGGAGTGCTTTACCATCCAGAGCAGCCAGCCCCGTCCGATCTACGGCCCGAGTTGACGAACGCCATTGTCCCGTACACCGGTGGCAGACATCGACATTCTGGTCGACGGCACCGGAGAAGCCGGAGAAAGGGAGACCCGAACCACCCGAAACCAAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTGAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTTTACCAAAACATTGGGCTGAAAGACAAGGAAAGATACAGGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGATATTCATGCAGCTAACTATTCAAAACATGGAGAGTAG 975 48.41 MSPPARSKSWNGGVDKHYPPALATHDSVISDPIAFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKVGSEVLRGVLYHPEQPAPSDLRPELTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRQATDIHAANYSKHGE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47361510 47364277 - Maker00007044 Lcy9g2296 643412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2296 324 Gene3D - 26 126 IPR036431 GO:0003677(InterPro)
Lcy9g2296 324 SMART hmgende2 237 306 IPR009071 -
Lcy9g2296 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Lcy9g2296 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Lcy9g2296 324 MobiDBLite consensus disorder prediction 213 244 - -
Lcy9g2296 324 Coils Coil 294 314 - -
Lcy9g2296 324 SUPERFAMILY ARID-like 29 128 IPR036431 GO:0003677(InterPro)
Lcy9g2296 324 MobiDBLite consensus disorder prediction 218 235 - -
Lcy9g2296 324 CDD HMG-box_AtHMGB9-like 238 304 - -
Lcy9g2296 324 Gene3D High mobility group box domain 222 318 IPR036910 -
Lcy9g2296 324 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Lcy9g2296 324 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Lcy9g2296 324 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677(InterPro)
Lcy9g2296 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
Lcy9g2296 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 316 - -
Lcy9g2296 324 SUPERFAMILY HMG-box 235 309 IPR036910 -
Lcy9g2296 324 SMART ARID_2 26 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0460 Lcy-Chr13:5509030 Lcy9g2296 Lcy-Chr9:47361510 3.21E-81 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20736 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2296 - - - 0.0