Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2319 ATGGCTGGATCGGATGAGAACAACCCGGGAGTGATCGGACGGCCAAATCTCCATGGGAGTTTACGAGTTGGTGGTGGCGGTGGTGGCAAATTTGTAGTGGGGGTGGGTCAAAATCGCAGAGCTTTGAGCAGCATTAATGGCAATGTTACGGCAGCTCCTCCCCCTCATCCCTGTGCAGTCCTCAAAAAAGGCCTAACAGAAACTGATGTTGCTCTCAACAATAAAGACCCTCCGATTCCGATTCATCGACCGATCACTCGGAAGTTTGCTGCTCAGCTGGCTAATAAGCATCAGCAACCTGTACCTGAGGTTGATAGAAAGCCACTACAATCTGTCCCAACTCGAAAAGAATCTTTAGATCATCATACCATCATAGAGGAAGATGATTCTATGGGAGATTCAGCAGTACCAATGTTTGTACAGCATACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAAGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGACATAGACTGCAGCGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGACGACTTGTACGCTTACTACAGGAAAGCTGAGGTTTCTGGCTGTGTCCCACCGAACTACATGGCTCAGCAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAGTTTGAGCTGATGGAGGAGACATTGTATCTAACAGTCAACCTGATCGATAGGTTCTTGGCGGTTCAGTCAGTGGTGAGGAAGAAGCTCCAGCTTGTTGGGGTAACGGCCATGCTTATTGCCTGCAAGTATGAAGAAGTTTCTGTGCCTGTTGTGGATGATCTTATTCTCATATCTGACAAGGCCTACAGCCGGAAAGAAGTTTTGGACATGGAGAAGTTGATGATAAACACCTTACAGTTCAATCTGTCTGTGCCAACACCTTATGTCTTCATAAGGAGGTTTCTCAAAGCTGCTCAATCTGATCGAGAGCTGGATCTGCTGTCATTCTTCATGGTGGAGCTCTGTTTAGTGGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGTACCATCAATGGCTTCAAAGAATGGAGCAAAACCAGTGAATGGCACACTGGATATTCACAGGAACAGCTTCTGGAATGTTCACGTTTGATGGTGGGGTTCCATCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGCACATCCAAGTTTGGATATGCTGCAAGAAGTGAACCAGCAAACTTTCTGCTGGAAGGAAGGCTATAG 1320 45.61 MAGSDENNPGVIGRPNLHGSLRVGGGGGGKFVVGVGQNRRALSSINGNVTAAPPPHPCAVLKKGLTETDVALNNKDPPIPIHRPITRKFAAQLANKHQQPVPEVDRKPLQSVPTRKESLDHHTIIEEDDSMGDSAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDCSDKKDQLAVVEYIDDLYAYYRKAEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYSRKEVLDMEKLMINTLQFNLSVPTPYVFIRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTINGFKEWSKTSEWHTGYSQEQLLECSRLMVGFHQKAGTGKLTGVHRKYCTSKFGYAARSEPANFLLEGRL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47549657 47553050 - Maker00007220 Lcy9g2319 643435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2319 439 SUPERFAMILY Cyclin-like 313 432 IPR036915 -
Lcy9g2319 439 Gene3D - 186 425 - -
Lcy9g2319 439 PANTHER CYCLINS 159 418 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy9g2319 439 CDD CYCLIN_AtCycB-like_rpt1 165 309 - -
Lcy9g2319 439 SMART cyclin_7 318 400 IPR013763 -
Lcy9g2319 439 SMART cyclin_7 221 305 IPR013763 -
Lcy9g2319 439 Pfam Cyclin, N-terminal domain 186 312 IPR006671 -
Lcy9g2319 439 SMART Cyclin_C_2 314 431 IPR004367 -
Lcy9g2319 439 FunFam G2/mitotic-specific cyclin-1 301 426 - -
Lcy9g2319 439 ProSitePatterns Cyclins signature. 216 247 IPR048258 -
Lcy9g2319 439 Gene3D - 200 312 - -
Lcy9g2319 439 MobiDBLite consensus disorder prediction 1 22 - -
Lcy9g2319 439 CDD CYCLIN_AtCycB-like_rpt2 314 430 - -
Lcy9g2319 439 Pfam Cyclin, C-terminal domain 314 430 IPR004367 -
Lcy9g2319 439 SUPERFAMILY Cyclin-like 176 311 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0046 Lcy-Chr4:762718 Lcy9g2319 Lcy-Chr9:47549657 3.15E-55 dispersed
Lcy4g0049 Lcy-Chr4:803851 Lcy9g2319 Lcy-Chr9:47549657 3.15E-55 dispersed
Lcy9g2059 Lcy-Chr9:45380665 Lcy9g2319 Lcy-Chr9:47549657 5.18E-49 dispersed
Lcy1g1775 Lcy-Chr1:18946357 Lcy9g2319 Lcy-Chr9:47549657 2.40E-83 transposed
Lcy8g2036 Lcy-Chr8:46611979 Lcy9g2319 Lcy-Chr9:47549657 3.98E-70 transposed
Lcy1g0554 Lcy-Chr1:4776623 Lcy9g2319 Lcy-Chr9:47549657 2.49E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2319 K21777 - csv:101223199 780.015