Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2323 ATGAGCTGTTTTCCTTGCCTTCGTGTTCGTTGTAAAGACGCCAGCAAGGTCGAAATTGACAATGAAACTGGAAAGGGGAAGGAATCACAAACCAGAAGTGGAAACAGCCGGAAATGTGGGGCTGCACGAAGCTTCCCGTTTCGCGAACTGGCGACGGCCACAAGAGGTTTCAAGGAAGTGAATTTGATTGGTGAAGGGGGTTTTGGAAGAGTTTTCAAAGGCCGATTAGATACAGGCCAGGTTGTTGCGATTAAACAACTCAACCATGACGGTCTTCAAGGATTTCAGGAATTCATCGTCGAAGTTCTCATGTTAAGCTTATTGCATCACTGTAATCTTGTTACTTTGATCGGTTATTGTACTGATGGAGATCAAAGATTGTTGGTCTACGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTTGGTTTGTCCTCCAACCGAGCGCCATTGAGTTGGAACACTCGAATCAAGATTGCTCTTGGTGCAGCCCGGGGCCTCGAGTATCTTCACTGCACAGCCAATCCACCAGTCATCTACCGTGACTTGAAATCTGCGAATATTTTACTGGACGATGACTTCAATCCAAAGCTCTCGGATTTCGGACTGGCAAAGTTAGCACCGGTTGGTGACAACACCCATGTTTCCACCAGAGTGATGGGAACATATGGTTATTGTGCTCCAGAATATGCCATGAGCGGCAAACTGACACTTAAATCTGATATCTATTGCTTTGGTGTGGTTCTCTTGGAGATAATTACAGGTAGGAAAGCTATAGACTCCTCCAAGAAACCTGGAGAGCAAAATCTGGTTGCTTGGTCTCGCCCTTTTCTTAAAGACCGGAGGAATTTCGTTCAATTAGTCGATCCACTGCTGGAAGGACGCTACCCTCTGCGTTGTCTACACCATGCAATCGCAATTGCTGCAATGTGTCTCCAGGAGCAGCCAACGTTCCGACCAATCATCAGTGATATCGTCGTGGCCCTTGAGTACTTAGCTTCTCAGAGTTACACATCAGAACAAATGAGGGACGGAGTGCCTAGTCCCTCCAAACTATCTCCTCAAAAGGACAGTAGTGCCCACGTTCAAGAGTCAAGATGTGGAAAGAGTTCAAAATCCAAGTAA 1128 46.1 MSCFPCLRVRCKDASKVEIDNETGKGKESQTRSGNSRKCGAARSFPFRELATATRGFKEVNLIGEGGFGRVFKGRLDTGQVVAIKQLNHDGLQGFQEFIVEVLMLSLLHHCNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLSSNRAPLSWNTRIKIALGAARGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLAPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLEIITGRKAIDSSKKPGEQNLVAWSRPFLKDRRNFVQLVDPLLEGRYPLRCLHHAIAIAAMCLQEQPTFRPIISDIVVALEYLASQSYTSEQMRDGVPSPSKLSPQKDSSAHVQESRCGKSSKSK 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47609372 47612597 - Maker00007280 Lcy9g2323 643439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2323 375 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524(InterPro)
Lcy9g2323 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g2323 375 MobiDBLite consensus disorder prediction 341 367 - -
Lcy9g2323 375 ProSiteProfiles Protein kinase domain profile. 57 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2323 375 CDD STKc_IRAK 63 331 - -
Lcy9g2323 375 SMART serkin_6 57 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2323 375 FunFam probable serine/threonine-protein kinase RLCKVII 27 132 - -
Lcy9g2323 375 MobiDBLite consensus disorder prediction 21 40 - -
Lcy9g2323 375 FunFam Serine/threonine-protein kinase PBS1 133 346 - -
Lcy9g2323 375 SUPERFAMILY Protein kinase-like (PK-like) 38 331 IPR011009 -
Lcy9g2323 375 Pfam Protein kinase domain 58 326 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2323 375 MobiDBLite consensus disorder prediction 341 375 - -
Lcy9g2323 375 Gene3D Transferase(Phosphotransferase) domain 1 133 349 - -
Lcy9g2323 375 Gene3D Phosphorylase Kinase; domain 1 27 132 - -
Lcy9g2323 375 PANTHER OS07G0668900 PROTEIN 27 354 - -
Lcy9g2323 375 PIRSF ILK 10 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2262 Lcy-Chr13:41549578 Lcy9g2323 Lcy-Chr9:47609372 1.81E-199 dispersed
Lcy8g1861 Lcy-Chr8:44913548 Lcy9g2323 Lcy-Chr9:47609372 1.13E-133 dispersed
Lcy9g0711 Lcy-Chr9:24217776 Lcy9g2323 Lcy-Chr9:47609372 2.20E-136 dispersed
Lcy9g1932 Lcy-Chr9:44326369 Lcy9g2323 Lcy-Chr9:47609372 2.24E-83 dispersed
Lcy13g2261 Lcy-Chr13:41535916 Lcy9g2323 Lcy-Chr9:47609372 3.49E-92 wgd
Lcy4g0457 Lcy-Chr4:5506702 Lcy9g2323 Lcy-Chr9:47609372 6.93E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66234 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2323 - - - 0.0