Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2338 ATGGCTACGGGTATAGATTTTTCACCTCCCTTCACCCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAAGTGATGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGACTAGTGGGAAACCTCCCCGACACCTCTCAGTAATGCGGCATAGTGTGAGCTCCATAAAGCTGCTAGGACAAGCTGATTTAAGCTTGGATGCTGAAACTCTTGGTAATAAGTCACCTGATGGAAAAGCAGGATACTTACCCGTCTTCAGATCGGGTAGCTGTTCAGAAAGGGGACCTAAACAGTACATGGAAGACGAGCACATATGCATTGATGATCTTGTTGAGCACATCCATGCATGTGCGGACTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGGGGTACAGATGCCGCGGCCTTTGTTAGAAATAACATCCTCAGATTCATAGTCGAGGACTCCTGTTTTCCAATTAGTGTAGAGAAGGCGATTAAGAGTGCTTTTTTGAAAGCTGATTACGCATTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACAACTGCCCTAACTGCTTTCATTTGTGGAAGCTTAGTGTTAGTAAATGATCGCTGGGAAGTTGACCAATTCAAAATTCTTCTGCCAATATTTGCTGCTGCTGAATGCAATGAGCAAATGGGCCTTCCTTTTCTAACAATGATTATTGCGAATGCTGGAGATTGTCGAGCTGTTCTGGGGAGGAGGGGCAAGGCTATTGAGGTGTCGAAGGATCACAAGCCCAACTGTGCATCTGAAAAACTCAGAATTGAGAAGCTCGGTGGAGTGATTTACGATGGCTACCTCAATGGCCAGTTATCTGTTGCACGTGCTATTGGAGATTGGCACATGAAAGGTGCCAAGGGTTCTGCATGCCCACTGAGTGCAGAGCCAGAGCTGCAGGAATTGCATTTGACGGAGGAAGATGAGTTTCTAATAATGGGCTGCGATGGGCTTTGGGATGTCATGAGCAGTCAATATGCTATTACAATGGCAAGGAAAGAGCTGATGCTACATAATGATCCTGAAAGATGTTCAAGAGAGCTGGTAAGGGAGGCACTAAAGCGCAATACATGCGATAATTTAACCGTTATCGTGGTCTGTTTTTCGGCTGATCCTCCCCCTCGGATAGAAATTCCTCCAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTACTGGACTGCAATTCATGA 1263 45.21 MATGIDFSPPFTLLEGGGYNKDNVSATSDESSDSFNSLKQMTSGKPPRHLSVMRHSVSSIKLLGQADLSLDAETLGNKSPDGKAGYLPVFRSGSCSERGPKQYMEDEHICIDDLVEHIHACADFTSPGAFYGVFDGHGGTDAAAFVRNNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFICGSLVLVNDRWEVDQFKILLPIFAAAECNEQMGLPFLTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQELHLTEEDEFLIMGCDGLWDVMSSQYAITMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSADPPPRIEIPPTRVRRSISLEGLNLLKGVLDCNS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47748218 47752816 - Maker00007107 Lcy9g2338 643454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2338 420 CDD PP2Cc 90 385 IPR001932 -
Lcy9g2338 420 PANTHER PROTEIN PHOSPHATASE 2C 68 385 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy9g2338 420 Pfam Protein phosphatase 2C 92 200 IPR001932 -
Lcy9g2338 420 Pfam Protein phosphatase 2C 236 377 IPR001932 -
Lcy9g2338 420 MobiDBLite consensus disorder prediction 21 44 - -
Lcy9g2338 420 MobiDBLite consensus disorder prediction 18 49 - -
Lcy9g2338 420 Gene3D - 87 388 IPR036457 -
Lcy9g2338 420 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169(InterPro)
Lcy9g2338 420 SUPERFAMILY PP2C-like 85 386 IPR036457 -
Lcy9g2338 420 SMART PP2C_4 81 383 IPR001932 -
Lcy9g2338 420 ProSiteProfiles PPM-type phosphatase domain profile. 91 385 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1841 Lcy-Chr3:45607696 Lcy9g2338 Lcy-Chr9:47748218 2.63E-98 dispersed
Lcy4g2037 Lcy-Chr4:46923958 Lcy9g2338 Lcy-Chr9:47748218 4.04E-70 dispersed
Lcy6g0055 Lcy-Chr6:544538 Lcy9g2338 Lcy-Chr9:47748218 2.38E-17 dispersed
Lcy9g1902 Lcy-Chr9:44049366 Lcy9g2338 Lcy-Chr9:47748218 1.98E-33 dispersed
Lcy9g2120 Lcy-Chr9:45855010 Lcy9g2338 Lcy-Chr9:47748218 1.98E-07 dispersed
Lcy9g2338 Lcy-Chr9:47748218 Lcy6g0368 Lcy-Chr6:3404120 4.55E-06 dispersed
Lcy9g2338 Lcy-Chr9:47748218 Lcy12g0891 Lcy-Chr12:12724307 2.13E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2338 K14803 - csv:101205355 738.413