Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2339 ATGAGTTTCATTTGGCTTCTTTCATTGCTATCTCTCTCTTGTGGTATTTTCCCTCTTGGGTTTGGTAAGAACATTTCGTCAAGACCATCGGTCGTGAACATTGGAGCTATTCTCTCTTTTGATTCAACCATTGGAAAAGTTGCCAAGATTGCCATTGAAGAAGCTGTGAAAGATGTCAATGCAGATCCCAGCATTCTTCCCGGAATCAACCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTTTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATAAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCTCACATTTCATCCCAAGTCGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTTCAGCTACGGATCCTACTCTCTCTGCACTTCAATTTCCCTTCTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCAGTTGCTGAGATTGTTGATTTTTATGGTTGGAAAGAGGTTATTGCTATATATGTCGATGATGATTATGGGTGGAATGGTATTGCAACATTGGGTGATAAACTTTCCGAAAGGCGCTGTAAAATCACATATAAGGTGGGTATTAATCCAGAATCTGTGGGTAATCGAGCCCAAGTTATGGATCAACTTGTGAAAGTTGCACTAATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCGCGTTAGTCTTTTCAGTAGCCAAATACCTTCAAATGATGGGCAATGGATATGTATGGATAACAACTGATTGGCTTTCGTCTCTATTAGATAGTGTTGTTCCTCCCCCTCCTGAGGCCATGGAGTCGATTCAAGGAGTGCTTTCTTTACGCCAGCACACAGCAGATTCAGATAAAAAGAAAGCTTTTCTTTCCAGGTGGAATAAGTTAACTGGCAGCTCTTTAGGTCTGAATGCTTATGGTCTATATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATTGATAAATTTCTTAATCAAGGTGGGGTCATCACACATTCTAATGATTCCAAGCTGCATTTCAGTGAAGGCGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAATCGTCTGCTGAATAACATATTGGAGAGTGACTTTGTTGGTTTGACTGGTGCCATTAAGTTTGATTCTGGTAGATCCCTTGTTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTTGGTTACTGGTCCAACTATTCTGGTCTATCAATCGATGCTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCGCACGCAAATCAGAAGCTGTACGGGGTTATATGGCCAGGAAATACAATAGACACGCCTCGAGGATGGGTATTCCCAAACAACGGGAAGCTACTAAACATTGGAGTGCCACTTCGGGTCAGTTACAAGGAGTTTGTATCAAAAATCAAAGGGACAGACAATTTCCAAGGTTTCTGCATTGACGTGTTTACAGCTGCTGTAAACTTATTACCTTATGCTGTCCCGCACCGATTTACAGCTTTTGGCAATGGCCGTGAGAATCCAAATTACACAGATCTTGTGTATGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGTACAAGGCTTGTGGATTTTACTCTGCCATATACTACTTCTGGACTAGTTGTTGTGGCCCCAACCAAAAAACTGAACACTGGTGCTTGGGCTTTCCTGCATCCGTTTTCTCCAGCCATGTGGATGGTCACTGCTAGTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATAGGACGAATGATGAATTCCGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGTGATAGCATCTCAAGAGTTTTAAGTGTGTCCATACTCTTATCTCGAACTAGACCACTAGGACATGCCGATTGTTCGAGTCCATATACTTTTTCTCTCCTCTTTCCTGTTGATATGTCGTTAAAATTGCCTGCTGATCCAGTTATTGCTTGTAAACTTTGCAGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAGAACACAATTAGCACTCTCGGCCGCCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATAATAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGTTATATTCTCCAATCAATGGAATTGAAACCTTGAGGGAAGGTGATGAACCGATCGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATCTGAGTGAGGAGCTCAACATATCTAAATCTAGGCTTATTCCTCTTGGAACACCCGAAGCATATGCCAAGGCACTTGATCTTGGCCCTGACAAGAAGGGAGGTGTTGCTGCTATAGTTGATGAACTTCCATATGTGGAAAGTTTCCTGTCGAGACAGTGTACATTCAGAATTATTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCACGAGACTCTCCATTGGCTATAGATATGTCGACTGCCATTTTGCAGCTATCGGAGAATGGTGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCAGTACAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGCCTCTTTCTAATCTGTGGGATAGTTTGTTTCATTGCCCTTGCCATATACTGCTTTCAGATTACTCGTCAGCTATACCATTCTGATCCAAAAGAATCTGATCTGTCTAGCAGTAGTGGATCGCATTCTAACCGTCTTCGACGAATTATATCGATATTGGACGAGAAGAAAGAACCTTCTAAAAGGGAAAGCAAACGAAGGAAAGTTGAGAAATCATCTGAAAATGACAAGGACGATGATCATTTGGAGGTTAATCCTTGA 2910 42.1 MSFIWLLSLLSLSCGIFPLGFGKNISSRPSVVNIGAILSFDSTIGKVAKIAIEEAVKDVNADPSILPGINLWLQMQNSNCSGFLGMVEVLQLMENKTVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVDFYGWKEVIAIYVDDDYGWNGIATLGDKLSERRCKITYKVGINPESVGNRAQVMDQLVKVALMESRVMVLHVNPKLGALVFSVAKYLQMMGNGYVWITTDWLSSLLDSVVPPPPEAMESIQGVLSLRQHTADSDKKKAFLSRWNKLTGSSLGLNAYGLYAYDSVWVVAHAIDKFLNQGGVITHSNDSKLHFSEGGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDSGRSLVHPAYDIINVIGTGSRRVGYWSNYSGLSIDAPETLYSKPPNRSHANQKLYGVIWPGNTIDTPRGWVFPNNGKLLNIGVPLRVSYKEFVSKIKGTDNFQGFCIDVFTAAVNLLPYAVPHRFTAFGNGRENPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTTSGLVVVAPTKKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILCDSISRVLSVSILLSRTRPLGHADCSSPYTFSLLFPVDMSLKLPADPVIACKLCRFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIETLREGDEPIGFQVGSFAERYLSEELNISKSRLIPLGTPEAYAKALDLGPDKKGGVAAIVDELPYVESFLSRQCTFRIIGQEFTKSGWGFAFPRDSPLAIDMSTAILQLSENGDLQRIHDKWLVKSACSTELESDRLQLKSFWGLFLICGIVCFIALAIYCFQITRQLYHSDPKESDLSSSSGSHSNRLRRIISILDEKKEPSKRESKRRKVEKSSENDKDDDHLEVNP 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47757741 47762800 + Maker00007042 Lcy9g2339 643455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2339 969 PIRSF IGluLR_plant 1 639 IPR017103 -
Lcy9g2339 969 PIRSF IGluLR_plant 677 968 IPR017103 -
Lcy9g2339 969 FunFam Glutamate receptor 147 303 - -
Lcy9g2339 969 Gene3D - 578 758 - -
Lcy9g2339 969 MobiDBLite consensus disorder prediction 934 969 - -
Lcy9g2339 969 FunFam Glutamate receptor 759 867 - -
Lcy9g2339 969 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Lcy9g2339 969 CDD GluR_Plant 466 863 - -
Lcy9g2339 969 Pfam Receptor family ligand binding region 49 406 IPR001828 -
Lcy9g2339 969 Gene3D - 147 421 - -
Lcy9g2339 969 FunFam Glutamate receptor 463 579 - -
Lcy9g2339 969 Gene3D - 474 577 - -
Lcy9g2339 969 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 943 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy9g2339 969 Pfam Bacterial extracellular solute-binding proteins, family 3 486 681 IPR001638 -
Lcy9g2339 969 Gene3D - 50 396 - -
Lcy9g2339 969 SMART GluR_14 469 865 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy9g2339 969 CDD PBP1_GABAb_receptor_plant 33 422 IPR044440 -
Lcy9g2339 969 Gene3D - 796 870 - -
Lcy9g2339 969 Pfam Ligand-gated ion channel 864 892 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy9g2339 969 SUPERFAMILY Periplasmic binding protein-like II 445 865 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1443 Lcy-Chr8:41083633 Lcy9g2339 Lcy-Chr9:47757741 7.26E-308 dispersed
Lcy8g1444 Lcy-Chr8:41101731 Lcy9g2339 Lcy-Chr9:47757741 0 dispersed
Lcy9g1336 Lcy-Chr9:38122349 Lcy9g2339 Lcy-Chr9:47757741 9.97E-69 dispersed
Lcy1g0548 Lcy-Chr1:4731970 Lcy9g2339 Lcy-Chr9:47757741 0 wgd
Lcy4g0441 Lcy-Chr4:5357307 Lcy9g2339 Lcy-Chr9:47757741 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2339 K05387 - csv:101204862 1575.45