Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2343 | ATGCGTCCCTTTAGGTACCTTGCCGGTGTGAACTCCTCCGCCATCTCCGACACGGCGGAGCCCGAGAGGTATGACTCCGACTTCGTCATAATCCTCGCCGCCCTTCTCTGCGCCTTGATTTGCGTTCTCGGCCTTGTTGCTGTTGCCCGCTGTGCCTGGCTACGCCACCTCGCCGGCGATGGCGGCGGCGCCGCTTCCAATCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACCGCCGAGTTTGCTGCCCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATCCGCGTGCTGCCGCAGTGCGGCCATGGATTTCACGTGGCCTGTATCGACACGTGGTTCCGATCTCACTCCTCCTGTCCTTCGTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGCTTTCCGGCGAGCTCGAGTTCGAACGGTGGGACCGATTCCAGAGTAAAAGAGGAAGGAGAAGATAAGACGAATAGGTTCTTACCTTAG | 561 | 58.65 | MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASNRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFAVGDEIRVLPQCGHGFHVACIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTDSRVKEEGEDKTNRFLP | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 47777964 | 47778524 | + | Maker00007225 | Lcy9g2343 | 643459 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2343 | 186 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 149 | IPR013083 | - | |
Lcy9g2343 | 186 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
Lcy9g2343 | 186 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 20 | 167 | IPR052788 | - | |
Lcy9g2343 | 186 | SMART | ring_2 | 103 | 144 | IPR001841 | - | |
Lcy9g2343 | 186 | MobiDBLite | consensus disorder prediction | 160 | 186 | - | - | |
Lcy9g2343 | 186 | CDD | RING-H2_EL5-like | 102 | 145 | - | - | |
Lcy9g2343 | 186 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - | |
Lcy9g2343 | 186 | SUPERFAMILY | RING/U-box | 83 | 151 | - | - | |
Lcy9g2343 | 186 | MobiDBLite | consensus disorder prediction | 171 | 186 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy7g0550 | Lcy-Chr7:4886976 | Lcy9g2343 | Lcy-Chr9:47777964 | 1.98E-12 | dispersed | |
Lcy9g2343 | Lcy-Chr9:47777964 | Lcy4g0518 | Lcy-Chr4:6262193 | 1.06E-33 | dispersed | |
Lcy8g0201 | Lcy-Chr8:5032662 | Lcy9g2343 | Lcy-Chr9:47777964 | 1.41E-30 | transposed | |
Lcy6g2365 | Lcy-Chr6:48439518 | Lcy9g2343 | Lcy-Chr9:47777964 | 2.39E-53 | wgd |
Pathway information
