Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2343 ATGCGTCCCTTTAGGTACCTTGCCGGTGTGAACTCCTCCGCCATCTCCGACACGGCGGAGCCCGAGAGGTATGACTCCGACTTCGTCATAATCCTCGCCGCCCTTCTCTGCGCCTTGATTTGCGTTCTCGGCCTTGTTGCTGTTGCCCGCTGTGCCTGGCTACGCCACCTCGCCGGCGATGGCGGCGGCGCCGCTTCCAATCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACCGCCGAGTTTGCTGCCCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATCCGCGTGCTGCCGCAGTGCGGCCATGGATTTCACGTGGCCTGTATCGACACGTGGTTCCGATCTCACTCCTCCTGTCCTTCGTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGCTTTCCGGCGAGCTCGAGTTCGAACGGTGGGACCGATTCCAGAGTAAAAGAGGAAGGAGAAGATAAGACGAATAGGTTCTTACCTTAG 561 58.65 MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASNRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFAVGDEIRVLPQCGHGFHVACIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTDSRVKEEGEDKTNRFLP 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47777964 47778524 + Maker00007225 Lcy9g2343 643459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2343 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 149 IPR013083 -
Lcy9g2343 186 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Lcy9g2343 186 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 167 IPR052788 -
Lcy9g2343 186 SMART ring_2 103 144 IPR001841 -
Lcy9g2343 186 MobiDBLite consensus disorder prediction 160 186 - -
Lcy9g2343 186 CDD RING-H2_EL5-like 102 145 - -
Lcy9g2343 186 Pfam Ring finger domain 102 145 IPR001841 -
Lcy9g2343 186 SUPERFAMILY RING/U-box 83 151 - -
Lcy9g2343 186 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0550 Lcy-Chr7:4886976 Lcy9g2343 Lcy-Chr9:47777964 1.98E-12 dispersed
Lcy9g2343 Lcy-Chr9:47777964 Lcy4g0518 Lcy-Chr4:6262193 1.06E-33 dispersed
Lcy8g0201 Lcy-Chr8:5032662 Lcy9g2343 Lcy-Chr9:47777964 1.41E-30 transposed
Lcy6g2365 Lcy-Chr6:48439518 Lcy9g2343 Lcy-Chr9:47777964 2.39E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2343 - - - 0.0