Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2351 ATGGGACTCAAAGTGCTTTCCGCTCTCGACACTGCCAAAACCCAATTGTACCATTTCAAGGCCATCGTCATCGCCGGGATGGGGCTCTTCACCGACGCCTACGATCTCTTCAGCATCACTCCGATCATGACCCTCGTCGGACGTGTCTACTACCACGACCAACACTACGAGACTCCGGCCACCGTCAAATCCGCTATGTTGGCGGTGGCCCTTCTCGGAACGGCCACCGGTCAACTCGTGTTCGGCATACTCGGCGACCGAGTGGGACGGCGGCGCGTGTACGGACTCGCATTGGCGCTCATGGTGCTGAGCTCAATCGGATGTGGATTCTCAATCTGCACCACGCGGAGCTGCGTCCTTCTCAGCCTAGGGTTCTTCAGATTCCTTCTGGGACTGGGAATTGGGGGAGATTACCCATTGTCGGCGACAATAATGTCGGAGTTCGCGAACAAGAAGACACGTGGAGCGTTCATAGCGGCGGTGTTCTCGATGCAGGGGTTTGGGATCTTGGCCAGCTCCACCGTGACGTTGATCGTGTGTTCGATATTCGATCGGGCCTCAAATCACCCGCCGAATGATCGTACGCCGAAGGGGGCGGATATTGCTTGGAGGTTGATTCTCATGCTCGGCGCCGTCCCGGCGGCGATGACTTATTACTGGCGAATGATGATGCCGGAAACTGCCAGATACACAGCTCTAGTAGAGCGGAATGTGGCACAAGCAGCAAAGGACATGGAGAAAGTGCTGGACGTGTCATTGGTTGATATCACAGAAGACAGCCCTCTCTCCCCTTCGCCCCCAAATTTCGGCTTCTTTTCCAACGAGTTTCTCCGTCGCCATGGCCGCGACCTCTTCTCCTGCGCCGCCGCTTGGTTTCTCGTCGACATCGTATTCTACAGCAGCAACCTCTTCCAATCCAAAATCTACACCCAATTCCTCCGCCCCAAACAAAACGTCAACGTTTACCGCGACGCCTTCAACGAAGCCAAACTCCAAGCCATCGTCGCCGTCTGTTCCACCATTCCCGGCTACTTCGTCGCCGTCTATTTCATCGACCGATTGGGCCGAGTCAAGATCCAAATCATGGGATTCTTCTTCATGGCGGCCGGCTATCTCGCCATCGCCATCCCCTACGACAGATACTGGGCCTCTGACGAACACAAAATCGGCTTCATGATACTCTACTGCCTCACATTCTTCTTCTCAAACTTCGGCCCCAACACCACGACTTTCATTCTCCCGGCCGAGCTCTTTCCGGCCAGGTTCAGATCGACCTGCCACGGAATCTCCGGCGCGGCCGGGAAAATCGGGGCGATCATCGGCGCCGTCGGCTTCCTATGGGCGTCGCACGACCGTGAAGAGAACGGGTACCCGAAAGGAATTGGGATGAAGGCGTCGCTGATGATTCTGGGTGGGGTCAGTCTGGTGGGAGTGGTGGTCACGTATTTCTTCACCAGAGAAACCACTGGAAGGTCGTTGGAAGAGAACGAGAACGAAGATGAATACGCAGGGGTCTGCTTTCTCAGGTGCTTCCGCGACAAAAGCGCTTGCTCGCTTCCGCTTCCTGAAGATGACGACATGTCGTCACGTTCCACCTCCAACTCCATTCAAAGTAGTAGACCAATTCGTTAA 1632 55.45 MGLKVLSALDTAKTQLYHFKAIVIAGMGLFTDAYDLFSITPIMTLVGRVYYHDQHYETPATVKSAMLAVALLGTATGQLVFGILGDRVGRRRVYGLALALMVLSSIGCGFSICTTRSCVLLSLGFFRFLLGLGIGGDYPLSATIMSEFANKKTRGAFIAAVFSMQGFGILASSTVTLIVCSIFDRASNHPPNDRTPKGADIAWRLILMLGAVPAAMTYYWRMMMPETARYTALVERNVAQAAKDMEKVLDVSLVDITEDSPLSPSPPNFGFFSNEFLRRHGRDLFSCAAAWFLVDIVFYSSNLFQSKIYTQFLRPKQNVNVYRDAFNEAKLQAIVAVCSTIPGYFVAVYFIDRLGRVKIQIMGFFFMAAGYLAIAIPYDRYWASDEHKIGFMILYCLTFFFSNFGPNTTTFILPAELFPARFRSTCHGISGAAGKIGAIIGAVGFLWASHDREENGYPKGIGMKASLMILGGVSLVGVVVTYFFTRETTGRSLEENENEDEYAGVCFLRCFRDKSACSLPLPEDDDMSSRSTSNSIQSSRPIR 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47815231 47818144 - Maker00007079 Lcy9g2351 643467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2351 543 Pfam Sugar (and other) transporter 23 497 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy9g2351 543 FunFam Inorganic phosphate transporter 1-6 17 505 - -
Lcy9g2351 543 MobiDBLite consensus disorder prediction 522 543 - -
Lcy9g2351 543 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 6 496 - -
Lcy9g2351 543 MobiDBLite consensus disorder prediction 525 543 - -
Lcy9g2351 543 ProSitePatterns Sugar transport proteins signature 2. 129 154 IPR005829 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy9g2351 543 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 489 IPR020846 GO:0022857(InterPro)
Lcy9g2351 543 SUPERFAMILY MFS general substrate transporter 9 499 IPR036259 -
Lcy9g2351 543 CDD MFS_PhT 22 488 - -
Lcy9g2351 543 Gene3D MFS general substrate transporter like domains 17 506 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0374 Lcy-Chr13:4260426 Lcy9g2351 Lcy-Chr9:47815231 1.79E-178 dispersed
Lcy6g0102 Lcy-Chr6:948176 Lcy9g2351 Lcy-Chr9:47815231 5.44E-153 dispersed
Lcy9g2351 Lcy-Chr9:47815231 Lcy12g2119 Lcy-Chr12:42485577 5.65E-186 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2351 K08176 - csv:101218554 882.478