Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2351 | ATGGGACTCAAAGTGCTTTCCGCTCTCGACACTGCCAAAACCCAATTGTACCATTTCAAGGCCATCGTCATCGCCGGGATGGGGCTCTTCACCGACGCCTACGATCTCTTCAGCATCACTCCGATCATGACCCTCGTCGGACGTGTCTACTACCACGACCAACACTACGAGACTCCGGCCACCGTCAAATCCGCTATGTTGGCGGTGGCCCTTCTCGGAACGGCCACCGGTCAACTCGTGTTCGGCATACTCGGCGACCGAGTGGGACGGCGGCGCGTGTACGGACTCGCATTGGCGCTCATGGTGCTGAGCTCAATCGGATGTGGATTCTCAATCTGCACCACGCGGAGCTGCGTCCTTCTCAGCCTAGGGTTCTTCAGATTCCTTCTGGGACTGGGAATTGGGGGAGATTACCCATTGTCGGCGACAATAATGTCGGAGTTCGCGAACAAGAAGACACGTGGAGCGTTCATAGCGGCGGTGTTCTCGATGCAGGGGTTTGGGATCTTGGCCAGCTCCACCGTGACGTTGATCGTGTGTTCGATATTCGATCGGGCCTCAAATCACCCGCCGAATGATCGTACGCCGAAGGGGGCGGATATTGCTTGGAGGTTGATTCTCATGCTCGGCGCCGTCCCGGCGGCGATGACTTATTACTGGCGAATGATGATGCCGGAAACTGCCAGATACACAGCTCTAGTAGAGCGGAATGTGGCACAAGCAGCAAAGGACATGGAGAAAGTGCTGGACGTGTCATTGGTTGATATCACAGAAGACAGCCCTCTCTCCCCTTCGCCCCCAAATTTCGGCTTCTTTTCCAACGAGTTTCTCCGTCGCCATGGCCGCGACCTCTTCTCCTGCGCCGCCGCTTGGTTTCTCGTCGACATCGTATTCTACAGCAGCAACCTCTTCCAATCCAAAATCTACACCCAATTCCTCCGCCCCAAACAAAACGTCAACGTTTACCGCGACGCCTTCAACGAAGCCAAACTCCAAGCCATCGTCGCCGTCTGTTCCACCATTCCCGGCTACTTCGTCGCCGTCTATTTCATCGACCGATTGGGCCGAGTCAAGATCCAAATCATGGGATTCTTCTTCATGGCGGCCGGCTATCTCGCCATCGCCATCCCCTACGACAGATACTGGGCCTCTGACGAACACAAAATCGGCTTCATGATACTCTACTGCCTCACATTCTTCTTCTCAAACTTCGGCCCCAACACCACGACTTTCATTCTCCCGGCCGAGCTCTTTCCGGCCAGGTTCAGATCGACCTGCCACGGAATCTCCGGCGCGGCCGGGAAAATCGGGGCGATCATCGGCGCCGTCGGCTTCCTATGGGCGTCGCACGACCGTGAAGAGAACGGGTACCCGAAAGGAATTGGGATGAAGGCGTCGCTGATGATTCTGGGTGGGGTCAGTCTGGTGGGAGTGGTGGTCACGTATTTCTTCACCAGAGAAACCACTGGAAGGTCGTTGGAAGAGAACGAGAACGAAGATGAATACGCAGGGGTCTGCTTTCTCAGGTGCTTCCGCGACAAAAGCGCTTGCTCGCTTCCGCTTCCTGAAGATGACGACATGTCGTCACGTTCCACCTCCAACTCCATTCAAAGTAGTAGACCAATTCGTTAA | 1632 | 55.45 | MGLKVLSALDTAKTQLYHFKAIVIAGMGLFTDAYDLFSITPIMTLVGRVYYHDQHYETPATVKSAMLAVALLGTATGQLVFGILGDRVGRRRVYGLALALMVLSSIGCGFSICTTRSCVLLSLGFFRFLLGLGIGGDYPLSATIMSEFANKKTRGAFIAAVFSMQGFGILASSTVTLIVCSIFDRASNHPPNDRTPKGADIAWRLILMLGAVPAAMTYYWRMMMPETARYTALVERNVAQAAKDMEKVLDVSLVDITEDSPLSPSPPNFGFFSNEFLRRHGRDLFSCAAAWFLVDIVFYSSNLFQSKIYTQFLRPKQNVNVYRDAFNEAKLQAIVAVCSTIPGYFVAVYFIDRLGRVKIQIMGFFFMAAGYLAIAIPYDRYWASDEHKIGFMILYCLTFFFSNFGPNTTTFILPAELFPARFRSTCHGISGAAGKIGAIIGAVGFLWASHDREENGYPKGIGMKASLMILGGVSLVGVVVTYFFTRETTGRSLEENENEDEYAGVCFLRCFRDKSACSLPLPEDDDMSSRSTSNSIQSSRPIR | 543 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 47815231 | 47818144 | - | Maker00007079 | Lcy9g2351 | 643467 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2351 | 543 | Pfam | Sugar (and other) transporter | 23 | 497 | IPR005828 | GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro) | |
Lcy9g2351 | 543 | FunFam | Inorganic phosphate transporter 1-6 | 17 | 505 | - | - | |
Lcy9g2351 | 543 | MobiDBLite | consensus disorder prediction | 522 | 543 | - | - | |
Lcy9g2351 | 543 | PANTHER | SOLUTE CARRIER FAMILY 22 MEMBER | 6 | 496 | - | - | |
Lcy9g2351 | 543 | MobiDBLite | consensus disorder prediction | 525 | 543 | - | - | |
Lcy9g2351 | 543 | ProSitePatterns | Sugar transport proteins signature 2. | 129 | 154 | IPR005829 | GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro) | |
Lcy9g2351 | 543 | ProSiteProfiles | Major facilitator superfamily (MFS) profile. | 21 | 489 | IPR020846 | GO:0022857(InterPro) | |
Lcy9g2351 | 543 | SUPERFAMILY | MFS general substrate transporter | 9 | 499 | IPR036259 | - | |
Lcy9g2351 | 543 | CDD | MFS_PhT | 22 | 488 | - | - | |
Lcy9g2351 | 543 | Gene3D | MFS general substrate transporter like domains | 17 | 506 | IPR036259 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0374 | Lcy-Chr13:4260426 | Lcy9g2351 | Lcy-Chr9:47815231 | 1.79E-178 | dispersed | |
Lcy6g0102 | Lcy-Chr6:948176 | Lcy9g2351 | Lcy-Chr9:47815231 | 5.44E-153 | dispersed | |
Lcy9g2351 | Lcy-Chr9:47815231 | Lcy12g2119 | Lcy-Chr12:42485577 | 5.65E-186 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g2351 | K08176 | - | csv:101218554 | 882.478 |