Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2354 ATGTCAGGATCTGAGGCCGGAGTGATGACCAGCAGCGAACCCTTCACCATCGGTCTTCAGAAGAGTCCAGTACAGTCACAACAGCCGGTCTTGCAGGGCATGCATTTACCTTTCGGCGCCGACGGCGTCTACAAGCCCGTCGCCACCGCCTCCCCCACCTATCACTCCTCCGCCGTCGCCGATGGATCTGCTCGAGAAGCTTTCGTTAACATGAATACTCAAAGCGAGCCTGTAAAGCGGAAGAGAGGGAGGCCTAGGAAGTATGGGCCAGATGGCAGTATGGCACTGGCTCCTGCAGTCCCCTCCGCCGCCGCAACTCAGTCCAGTGGAGGTTTTTCTCCTCCGCCCACCGCCGCTCCTCCGTCGGGAGGACCAGCCTCTCCAACTTCCTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTAGCAAAAAGCAGCAGTTAGATGCTTTGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATTACCGTAAAAGCTGGAGAGGATGTTTCTTCGAAAATAATGTCATTTTCGCAGAATGGTCCTAGAGCTGTTTGTATCCTTACAGCAAATGGAGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTATGAGGGGCGATTCGAGATTTTGTCACTATCTGGGTCATATCTCCTCTCTGAAAATGGCGGTCAGCGGAGCCGAACTGGGGGTCTAAGTGTTTCATTGTCTGGACCAGATGGTCGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCGTCTCCTGTTCAGGTGGTGGTGGGGAGTTTCGTCACTGATGGGGGGCACAACGAATTGAAACAAGCAAACCAAATAGAACAGCCGCCTGTTACTGGACCACACAAACTTGCCCCGATCCGTGCTGGAATGTCGGGGGCGAGCAGCCCGCCATCGCGTGGGACTCTCAGTGAATCCTCAGGAGGGCCTGGGAGTCCGTTTAATCAGAGTGCTGGAGTCTGCAATAACACCATACCTTGGAAGTAA 1029 54.42 MSGSEAGVMTSSEPFTIGLQKSPVQSQQPVLQGMHLPFGADGVYKPVATASPTYHSSAVADGSAREAFVNMNTQSEPVKRKRGRPRKYGPDGSMALAPAVPSAAATQSSGGFSPPPTAAPPSGGPASPTSLKKARGRPPGSSKKQQLDALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGGHNELKQANQIEQPPVTGPHKLAPIRAGMSGASSPPSRGTLSESSGGPGSPFNQSAGVCNNTIPWK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47824431 47829183 - Maker00007097 Lcy9g2354 643470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2354 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 326 IPR039605 GO:0003680(InterPro)
Lcy9g2354 342 MobiDBLite consensus disorder prediction 70 147 - -
Lcy9g2354 342 FunFam AT-hook motif nuclear-localized protein 1-like 159 290 - -
Lcy9g2354 342 SMART AT_hook_2 79 91 IPR017956 GO:0003677(InterPro)
Lcy9g2354 342 SMART AT_hook_2 132 144 IPR017956 GO:0003677(InterPro)
Lcy9g2354 342 CDD DUF296 158 272 IPR005175 -
Lcy9g2354 342 Gene3D - 159 289 - -
Lcy9g2354 342 ProSiteProfiles PPC domain profile profile. 153 293 IPR005175 -
Lcy9g2354 342 MobiDBLite consensus disorder prediction 283 342 - -
Lcy9g2354 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 273 IPR005175 -
Lcy9g2354 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 276 - -
Lcy9g2354 342 MobiDBLite consensus disorder prediction 1 28 - -
Lcy9g2354 342 MobiDBLite consensus disorder prediction 309 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1659 Lcy-Chr12:36978223 Lcy9g2354 Lcy-Chr9:47824431 6.70E-19 dispersed
Lcy12g1941 Lcy-Chr12:40769394 Lcy9g2354 Lcy-Chr9:47824431 2.29E-68 dispersed
Lcy13g0673 Lcy-Chr13:9570844 Lcy9g2354 Lcy-Chr9:47824431 1.45E-74 dispersed
Lcy4g2013 Lcy-Chr4:46631615 Lcy9g2354 Lcy-Chr9:47824431 2.18E-46 dispersed
Lcy6g2037 Lcy-Chr6:43325648 Lcy9g2354 Lcy-Chr9:47824431 7.75E-62 dispersed
Lcy6g2216 Lcy-Chr6:46500582 Lcy9g2354 Lcy-Chr9:47824431 1.55E-27 dispersed
Lcy9g0896 Lcy-Chr9:30102688 Lcy9g2354 Lcy-Chr9:47824431 4.22E-61 dispersed
Lcy9g2354 Lcy-Chr9:47824431 Lcy9g2360 Lcy-Chr9:47863649 2.32E-22 proximal
Lcy13g2276 Lcy-Chr13:41652746 Lcy9g2354 Lcy-Chr9:47824431 2.00E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2354 - - - 0.0