Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2355 ATGGAGAAGGCGCCGACCACTGTTTCAGCCATGGATGCTTTCGAGAAGCTGGAGAAGGTCGGAGAAGGAACTTATGGCAAAGTTTATAGGGCAAGGGAGAAGGCTACCGGCAAGATTGTGGCGCTCAAGAAGACGCGCCTCCATGAGGATGAAGAAGGTGTTCCTCCCACTACTCTCAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCTCATATCGTTAGGCTGATGGATGTCAAACAGGGCCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATATATGGATACTGATCTGAAGAAATACATCAAGAGTTTCCGTCATACGGGAGAAGGCATTCCCGTCAGCACTGTCAAGAGTTTGATGTACCAACTCTGCAAGGGTGTTGCCTTCTGCCATGGTCATGGAATCTTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGAAAGACTATGATGCTCAAAATTGCAGACCTTGGGCTGGCTCGAGCATTTACTGTGCCAATTAAGAAGTATACTCATGAGGCAACTCCCGAAGTTCTGTTGGGAGCTACTCATTACTCCACAGCTGTAGATATGTGGTCTGTTGGCTGCATATTCGCCGAACTTGCCACCAAGCAGGCGCTCTTTCCTGGAGATTCCGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGAACCCCAAATGAAAAAATCTGGCCTGGTGTGAGCAAACTAATGAACTGGCATGAGTATCCCCAGTGGAACCCCCAAAGCCTTTCAACTGCCGTCCCCAACTTGGATGATAAAGGGCTAGATCTGCTTGCACAAATGTTGAAGTATGAACCCTCAACACGTATTTCGGCAAAGAAAGCAATGGAACATCCTTATTTTGATGACTTGAACAAAGCATATCTCTGA 921 47.01 MEKAPTTVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIKSFRHTGEGIPVSTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEATPEVLLGATHYSTAVDMWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKIWPGVSKLMNWHEYPQWNPQSLSTAVPNLDDKGLDLLAQMLKYEPSTRISAKKAMEHPYFDDLNKAYL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47833661 47835933 + Maker00007144 Lcy9g2355 643471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2355 306 ProSiteProfiles Protein kinase domain profile. 14 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2355 306 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Lcy9g2355 306 SUPERFAMILY Protein kinase-like (PK-like) 8 302 IPR011009 -
Lcy9g2355 306 Pfam Protein kinase domain 14 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2355 306 PANTHER CELL DIVISION PROTEIN KINASE 14 298 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Lcy9g2355 306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g2355 306 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
Lcy9g2355 306 FunFam Cyclin-dependent kinase 2 102 305 - -
Lcy9g2355 306 Gene3D Transferase(Phosphotransferase) domain 1 101 305 - -
Lcy9g2355 306 SMART serkin_6 14 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2355 306 FunFam Cyclin-dependent kinase B2,2 10 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1650 Lcy-Chr1:16968251 Lcy9g2355 Lcy-Chr9:47833661 1.05E-136 dispersed
Lcy7g0070 Lcy-Chr7:687724 Lcy9g2355 Lcy-Chr9:47833661 2.79E-74 dispersed
Lcy7g0583 Lcy-Chr7:5163007 Lcy9g2355 Lcy-Chr9:47833661 2.83E-101 dispersed
Lcy9g0607 Lcy-Chr9:20148016 Lcy9g2355 Lcy-Chr9:47833661 4.41E-55 dispersed
Lcy9g2355 Lcy-Chr9:47833661 Lcy7g1603 Lcy-Chr7:31271690 5.46E-28 dispersed
Lcy9g2355 Lcy-Chr9:47833661 Lcy13g1705 Lcy-Chr13:36024367 7.29E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66235 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2355 K07760 - csv:101208001 593.193