Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2358 ATGACTGTCGAATTATGGGTATGTGAAATTGGTACTTACCATCTAGGATTTGACAAGATATATGGTCATGTTTGTTTCATTGGTTTTGAGATGAGTTTTGTTACGGCGTCCCAATCCAGTATCCGGACAGTGTCACCGCCGAAACAAACACTCTCATTCCCAGAGCGGAATGCAAATATCAGCGCTCCTGTTAATTCCAACTCGGCGAGACAAACATTGGCGCGGCCGAGTCAAAGCTGTATTTTAACTCGGAAGGCAACCGGAGTCGTTTCCCTCCGCCTCATCAGTGCCCTTTCTTCTTCTTCTTCTCCACTTGCTCCGAACAATTTCATAGCTCTGACCGATGTCGATTGCTCCTTCTGCAGACTGCTCGTCGCGCATGTTGCCGCTCTGAATGTTTCAATGCATATTGCACAAGGATTCAACGCCCAACTCCACCTTCTCCTCTCGATACCTGACATTTCTTCTCAACTGCGTACGGCGAGCCTCTTCTTTTTCATCCCTTGTAATCCATCTCTCGCAGGCGAGCTCTTATGTTATTATGCCAATATTTTTATATGTATCTTCTTCTTCTTTCTGCTATGGCTTTTCTGGACCATTATTGTTTGTTTCCGTACGGAGAGAATGAGACGAACCATTGTTTTCGTTTTCACCGCACAATCTCAATTATGTCGCTATCAGTGGAATGAGTTATGCTTTTATTTGCATTTTGATAGCGTTATAAGCAAAATGGACGATAGCGATAAGGCGGGGCAGGATTTGCCACACGGTCCTGGCGCAGGTCTTGCTCACGACCAAGTTCAAGTTCAGGAACCGGGATCTGCACTGCCAAAGGAGGATCAGAACCTCAAAGAAGATGGGCAGTCAGCCTGCCCAACGTTTGACGATGTTAAATTTCACGAACGTTCTTGCCTTCAAGAACCGATTGATGACGATCAGAATATGCCTGATCAGCCTAATGTCGAGACTGCTGCTGATGGAAAAGTTCTCGAGGTTGCTCTCGATGAACCGCCTGCAAGGAAAGAAAATGCCATGGAGACTGATTCCCAAATTGGGAATGAAGATAATCCTTCTGCACCTCCCATTTCACCTGAGATCTCTCTGCCTTCAAATGCCGAAAATCAGAGTGCGACACCCGTGAAGTGGACTGATATCGAAATGGCTGAAGCTGACGAATCAGGGACACCGGAGGATAGGGTGGCATTTATGAAGGAAATTGAGAATTTCTACAGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAATTGTTTGAAGTTGTGGAGAGCTGTTATTAGGCTGGGAGGCTATGATGTGATCTCTTTAGTTATGTGCATAACGTGTCTTTCCTCTTCATTGGCTATTCTTGACATGCAGGCACTTTTAGAATATGAAAAGCATAAAAAGCTAACTGGGGAACTGCAACTCCCTGTTGGATCCCTTCCTCAGACTACAAATACAGAAAAGGAGACTGGCTATTATCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCCGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAGAACCTCAAGGGTACAGTTCTTGAAGATCTTGGATTCTTGTTTACTTACGTTTTCTATGCTTTGTATTTTCACGTTGTTGATGTCCTGAGTCAGAATGATTGCTTTGAAGTGTATGCATTAGTCCCAGGGCTTCTACGAGAAGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACACCTTTTAAAAAGGTGGTGAGCTTACCCGCAAGAATCGATCCTCTTCAGACATCTGCCGTGGTCAGCCTGCATGTTGCATCACCTTGCATTAGCTGGGAGAATGAGAAACTTACCTCGGCTGTAATGCAAGGTGAGGTGTCATTGTAA 2016 45.88 MTVELWVCEIGTYHLGFDKIYGHVCFIGFEMSFVTASQSSIRTVSPPKQTLSFPERNANISAPVNSNSARQTLARPSQSCILTRKATGVVSLRLISALSSSSSPLAPNNFIALTDVDCSFCRLLVAHVAALNVSMHIAQGFNAQLHLLLSIPDISSQLRTASLFFFIPCNPSLAGELLCYYANIFICIFFFFLLWLFWTIIVCFRTERMRRTIVFVFTAQSQLCRYQWNELCFYLHFDSVISKMDDSDKAGQDLPHGPGAGLAHDQVQVQEPGSALPKEDQNLKEDGQSACPTFDDVKFHERSCLQEPIDDDQNMPDQPNVETAADGKVLEVALDEPPARKENAMETDSQIGNEDNPSAPPISPEISLPSNAENQSATPVKWTDIEMAEADESGTPEDRVAFMKEIENFYRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVISLVMCITCLSSSLAILDMQALLEYEKHKKLTGELQLPVGSLPQTTNTEKETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEVAEPIIKDKNLGSTSKREKNLKGTVLEDLGFLFTYVFYALYFHVVDVLSQNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPARIDPLQTSAVVSLHVASPCISWENEKLTSAVMQGEVSL 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47852590 47858702 + Maker00007030 Lcy9g2358 643474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2358 671 CDD ACD_sHsps-like 575 642 - -
Lcy9g2358 671 SMART ARID_2 393 470 - -
Lcy9g2358 671 CDD ARID 398 446 - -
Lcy9g2358 671 Gene3D - 381 449 IPR036431 GO:0003677(InterPro)
Lcy9g2358 671 SMART bright_3 397 475 IPR001606 GO:0003677(InterPro)
Lcy9g2358 671 Pfam ARID/BRIGHT DNA binding domain 399 445 IPR001606 GO:0003677(InterPro)
Lcy9g2358 671 MobiDBLite consensus disorder prediction 307 377 - -
Lcy9g2358 671 ProSiteProfiles ARID domain profile. 396 483 IPR001606 GO:0003677(InterPro)
Lcy9g2358 671 SUPERFAMILY ARID-like 391 479 IPR036431 GO:0003677(InterPro)
Lcy9g2358 671 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 268 553 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
Lcy9g2358 671 SUPERFAMILY HSP20-like chaperones 566 643 IPR008978 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2373 Lcy-Chr6:48498403 Lcy9g2358 Lcy-Chr9:47852590 5.15E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20741 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2358 - - - 0.0