Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2358 ATGACTGTCGAATTATGGGTATGTGAAATTGGTACTTACCATCTAGGATTTGACAAGATATATGGTCATGTTTGTTTCATTGGTTTTGAGATGAGTTTTGTTACGGCGTCCCAATCCAGTATCCGGACAGTGTCACCGCCGAAACAAACACTCTCATTCCCAGAGCGGAATGCAAATATCAGCGCTCCTGTTAATTCCAACTCGGCGAGACAAACATTGGCGCGGCCGAGTCAAAGCTGTATTTTAACTCGGAAGGCAACCGGAGTCGTTTCCCTCCGCCTCATCAGTGCCCTTTCTTCTTCTTCTTCTCCACTTGCTCCGAACAATTTCATAGCTCTGACCGATGTCGATTGCTCCTTCTGCAGACTGCTCGTCGCGCATGTTGCCGCTCTGAATGTTTCAATGCATATTGCACAAGGATTCAACGCCCAACTCCACCTTCTCCTCTCGATACCTGACATTTCTTCTCAACTGCGTACGGCGAGCCTCTTCTTTTTCATCCCTTGTAATCCATCTCTCGCAGGCGAGCTCTTATGTTATTATGCCAATATTTTTATATGTATCTTCTTCTTCTTTCTGCTATGGCTTTTCTGGACCATTATTGTTTGTTTCCGTACGGAGAGAATGAGACGAACCATTGTTTTCGTTTTCACCGCACAATCTCAATTATGTCGCTATCAGTGGAATGAGTTATGCTTTTATTTGCATTTTGATAGCGTTATAAGCAAAATGGACGATAGCGATAAGGCGGGGCAGGATTTGCCACACGGTCCTGGCGCAGGTCTTGCTCACGACCAAGTTCAAGTTCAGGAACCGGGATCTGCACTGCCAAAGGAGGATCAGAACCTCAAAGAAGATGGGCAGTCAGCCTGCCCAACGTTTGACGATGTTAAATTTCACGAACGTTCTTGCCTTCAAGAACCGATTGATGACGATCAGAATATGCCTGATCAGCCTAATGTCGAGACTGCTGCTGATGGAAAAGTTCTCGAGGTTGCTCTCGATGAACCGCCTGCAAGGAAAGAAAATGCCATGGAGACTGATTCCCAAATTGGGAATGAAGATAATCCTTCTGCACCTCCCATTTCACCTGAGATCTCTCTGCCTTCAAATGCCGAAAATCAGAGTGCGACACCCGTGAAGTGGACTGATATCGAAATGGCTGAAGCTGACGAATCAGGGACACCGGAGGATAGGGTGGCATTTATGAAGGAAATTGAGAATTTCTACAGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAATTGTTTGAAGTTGTGGAGAGCTGTTATTAGGCTGGGAGGCTATGATGTGATCTCTTTAGTTATGTGCATAACGTGTCTTTCCTCTTCATTGGCTATTCTTGACATGCAGGCACTTTTAGAATATGAAAAGCATAAAAAGCTAACTGGGGAACTGCAACTCCCTGTTGGATCCCTTCCTCAGACTACAAATACAGAAAAGGAGACTGGCTATTATCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCCGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAGAACCTCAAGGGTACAGTTCTTGAAGATCTTGGATTCTTGTTTACTTACGTTTTCTATGCTTTGTATTTTCACGTTGTTGATGTCCTGAGTCAGAATGATTGCTTTGAAGTGTATGCATTAGTCCCAGGGCTTCTACGAGAAGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACACCTTTTAAAAAGGTGGTGAGCTTACCCGCAAGAATCGATCCTCTTCAGACATCTGCCGTGGTCAGCCTGCATGTTGCATCACCTTGCATTAGCTGGGAGAATGAGAAACTTACCTCGGCTGTAATGCAAGGTGAGGTGTCATTGTAA 2016 45.88 MTVELWVCEIGTYHLGFDKIYGHVCFIGFEMSFVTASQSSIRTVSPPKQTLSFPERNANISAPVNSNSARQTLARPSQSCILTRKATGVVSLRLISALSSSSSPLAPNNFIALTDVDCSFCRLLVAHVAALNVSMHIAQGFNAQLHLLLSIPDISSQLRTASLFFFIPCNPSLAGELLCYYANIFICIFFFFLLWLFWTIIVCFRTERMRRTIVFVFTAQSQLCRYQWNELCFYLHFDSVISKMDDSDKAGQDLPHGPGAGLAHDQVQVQEPGSALPKEDQNLKEDGQSACPTFDDVKFHERSCLQEPIDDDQNMPDQPNVETAADGKVLEVALDEPPARKENAMETDSQIGNEDNPSAPPISPEISLPSNAENQSATPVKWTDIEMAEADESGTPEDRVAFMKEIENFYRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVISLVMCITCLSSSLAILDMQALLEYEKHKKLTGELQLPVGSLPQTTNTEKETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEVAEPIIKDKNLGSTSKREKNLKGTVLEDLGFLFTYVFYALYFHVVDVLSQNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPARIDPLQTSAVVSLHVASPCISWENEKLTSAVMQGEVSL 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47852590 47858702 + Maker00007030 Lcy9g2358 643474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2358 671 CDD ACD_sHsps-like 575 642 - -
Lcy9g2358 671 SMART ARID_2 393 470 - -
Lcy9g2358 671 CDD ARID 398 446 - -
Lcy9g2358 671 Gene3D - 381 449 IPR036431 GO:0003677(InterPro)
Lcy9g2358 671 SMART bright_3 397 475 IPR001606 GO:0003677(InterPro)
Lcy9g2358 671 Pfam ARID/BRIGHT DNA binding domain 399 445 IPR001606 GO:0003677(InterPro)
Lcy9g2358 671 MobiDBLite consensus disorder prediction 307 377 - -
Lcy9g2358 671 ProSiteProfiles ARID domain profile. 396 483 IPR001606 GO:0003677(InterPro)
Lcy9g2358 671 SUPERFAMILY ARID-like 391 479 IPR036431 GO:0003677(InterPro)
Lcy9g2358 671 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 268 553 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
Lcy9g2358 671 SUPERFAMILY HSP20-like chaperones 566 643 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2358 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g2373 Lcy-Chr6:48498403 Lcy9g2358 Lcy-Chr9:47852590 5.15E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g0460 . 174 540 ARID Transcription Factor Family AT1G04880 57.0 5.0e-107 385.6
Lcy9g2358 . 384 628 ARID Transcription Factor Family AT1G20910 50.2 1.2e-64 244.6
Lcy9g2296 . 16 309 ARID Transcription Factor Family AT1G76110 67.4 2.0e-111 399.8
Lcy13g0075 . 2 772 ARID Transcription Factor Family AT3G43240 59.5 3.7e-264 908.3
Lcy3g2277 . 5 396 ARID Transcription Factor Family AT3G43240 53.5 3.2e-114 410.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20741 None None None None Lcy TR