Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2360 ATGAGAATGGCGGGGTACAGCGAAGAAGGAGGACCAGCTTCACGCTACGTTCATCATCCTCAACTTCTGAATCCGGAACTGCACCTCGACACTCCATCCTCTTCTATTCCGTTTCATCATCATCATCATCAATTCAACCACTCTAATCACTCTAATTCCAAGCTCGATGAGGATCATAACAATAATCCAACCGCTCACAATCAAGACTCCGCGTTGGTCCCTTCTTCTCTCCGCCGCCCTCGCGGCCGTCCTCCTGGTTCCAAGAACAAGCCCAAGCCTCCCATTATCGTCACTCGCGATAGCCCCAACGTCCTTGGATCTCATGTCCTCGAGGTCTCCGCCAACGCCGATATCGTCGATAGCCTTTCTAATTATGCTCGCCGGAGGGGGAGGGGAGTCAGCATCCTCTCCGGCACCGGCACCGTCGCCAACGTCACTCTCCGTCAGCCCGCCTCTCCGGCTGGAAGTGTCATTACTCTTCATGGCAGGTTCGAGATTCTCTCGCTCACCGGCACCGTGCTTCCTCCGCCGGCTCCTCCGCAGGCGGGCGGGTTGTCCATATTTCTCGCCGGCGCACAGGGGCAGGTGGTCGGAGGGACGGTGGTGGGCCCCTTGGTGGCTTCGGGGCCGGTGATATTGATGGCCGCGTCGTTTTCGAACGCTGTGTTTGAGCGGTTGCCTTTGGAGGAAGAGGAGGAAGGCGGAGTGCAGGTTCAGCCCACGGCGTCGCAGTCGTCGGGGGTCACCGGAGGAGGAGGAGCTGGGCAGATGGGCGACGGCGGTGGAGGCAGTGGGAATGCAAATGACGGGAGCGGCGGCGGCGGTGGAGTTCCGTTCTTAGGTATGGGAGGAAATACAATGGGAGGATATCCATTTGCAGGAGATTTGTTTGGTTGGGGAAGTGGAAGTGGGAGTGCAGCAAAGCCTCGACAATTTTAG 939 58.04 MRMAGYSEEGGPASRYVHHPQLLNPELHLDTPSSSIPFHHHHHQFNHSNHSNSKLDEDHNNNPTAHNQDSALVPSSLRRPRGRPPGSKNKPKPPIIVTRDSPNVLGSHVLEVSANADIVDSLSNYARRRGRGVSILSGTGTVANVTLRQPASPAGSVITLHGRFEILSLTGTVLPPPAPPQAGGLSIFLAGAQGQVVGGTVVGPLVASGPVILMAASFSNAVFERLPLEEEEEGGVQVQPTASQSSGVTGGGGAGQMGDGGGGSGNANDGSGGGGGVPFLGMGGNTMGGYPFAGDLFGWGSGSGSAAKPRQF 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47863649 47864587 - Maker00007193 Lcy9g2360 643476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2360 312 MobiDBLite consensus disorder prediction 230 272 - -
Lcy9g2360 312 CDD DUF296 108 192 IPR005175 -
Lcy9g2360 312 MobiDBLite consensus disorder prediction 49 63 - -
Lcy9g2360 312 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 219 IPR005175 -
Lcy9g2360 312 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 261 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Lcy9g2360 312 FunFam AT-hook motif nuclear-localized protein 105 234 - -
Lcy9g2360 312 Gene3D - 107 241 - -
Lcy9g2360 312 MobiDBLite consensus disorder prediction 25 100 - -
Lcy9g2360 312 MobiDBLite consensus disorder prediction 237 251 - -
Lcy9g2360 312 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 232 - -
Lcy9g2360 312 ProSiteProfiles PPC domain profile profile. 102 241 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0904 Lcy-Chr7:9115055 Lcy9g2360 Lcy-Chr9:47863649 4.09E-70 dispersed
Lcy9g1687 Lcy-Chr9:42096058 Lcy9g2360 Lcy-Chr9:47863649 2.28E-44 dispersed
Lcy9g2354 Lcy-Chr9:47824431 Lcy9g2360 Lcy-Chr9:47863649 2.32E-22 proximal
Lcy4g0421 Lcy-Chr4:5099054 Lcy9g2360 Lcy-Chr9:47863649 2.20E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2360 - - - 0.0