Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2374 ATGTTAAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCATCCCTGGGTGCTTTAATTCCAGAGATCTTAGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTTGGACCCGAGTATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCTGGTGGTGTGTTGTTTGACCCCTTGAACCTGTCCAAGGATGCTGCAGCTTTTGAGGAACTTAAGGTAAAAGAGATTAAAAATGGGCGGTTAGCCATGGTTGCCTGGCTTGGATTTTACAGTCAAGCAGCATTGACGGGTAAGGGACCAGTCCAAAACCTTCTCGAACACATTTCAGATCCTTTCCACAAAAACATTCTTTCCCTGCTCAACTCTTCAAATTCAAAGGAATTAAGAAACCGAAGGCATAGGCCACAATGCATAATTGAGGGTGCTGGTGAACCTGATGTGAGCCTAGTAAAGCTTCTAAGTCAACTGGCGTATACGGATTGGATCCAGCCAGAGCCAATTGGGATGGGACCTCGATCTGCATGCGAGGCAACACACGCTTCAACGTGGTCCTCTGCATCTTCATCTTGTTTATTCTATTCCACCATCGACCCGGTTAGGCTTGACAATAAGAACCAGTTGTGA 789 44.99 MLNFEILHARWAMLASLGALIPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLEHISDPFHKNILSLLNSSNSKELRNRRHRPQCIIEGAGEPDVSLVKLLSQLAYTDWIQPEPIGMGPRSACEATHASTWSSASSSCLFYSTIDPVRLDNKNQL 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48038279 48043488 + Maker00007024 Lcy9g2374 643490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2374 262 FunFam Chlorophyll a-b binding protein, chloroplastic 1 175 - -
Lcy9g2374 262 SUPERFAMILY Chlorophyll a-b binding protein 4 177 - -
Lcy9g2374 262 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 174 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Lcy9g2374 262 Pfam Chlorophyll A-B binding protein 4 148 IPR022796 -
Lcy9g2374 262 Gene3D Chlorophyll a/b binding protein domain 1 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2537 Lcy-Chr5:48148995 Lcy9g2374 Lcy-Chr9:48038279 3.37E-24 dispersed
Lcy7g0042 Lcy-Chr7:331102 Lcy9g2374 Lcy-Chr9:48038279 1.17E-18 dispersed
Lcy9g2374 Lcy-Chr9:48038279 Lcy8g1625 Lcy-Chr8:42832368 5.83E-38 dispersed
Lcy9g2374 Lcy-Chr9:48038279 Lcy6g1248 Lcy-Chr6:15037695 6.22E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2374 K14172 - csv:101209460 348.591