Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g2376 | ATGGAGGACGTCGGCGCCCAAGTTGTGCCTCCAATTTTCATCCACCAAACCTTGACCAGTCGCTACACTGATGTGCCTTCCATCGCCAAGAAGCGTGCCTTATCCTATCAGGTCCCCAACTTCCATCAGCACAATCACCTCCACCAGCATCACTTGCAACAGCAGGGTCAACTCCATGCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCACAAGATTCCTCACCAAGCAGTCCTCGGATACTGTCTCCTCCGACCTAAAGAGGAAGGACGATTTGCCTGCTGGTATTCCCTCCACCCTAAAGAAGAAGACGGTGGAGGTTCTGGACGAGGAGGATGAGAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTCGAGGAGCCCGTGTCCAAACCCCCCAAAAAGGTCCGGCCTGGATCTCCCGCCGGTGGCACCTACCCTATGTGCCAGGTCGATAATTGTAAGGAAGATCTGTCGAATGCCAAAGACTATCACCGCAGACATAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACTGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCATCCACTTTCGGAATTTGATGATGGGAAGAGGAGTTGTAGGAGGAGACTTGCGGGGCACAACTGGCGTAGAAGAAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGACCAGGAAGTAGAGTACCCCCAAGCAGTGGAAATTTGGACATCGTCGGTCTATTGACTGTTCTAGCTCGGGCTCAAGGGAAAAACGAAGACCAGAGTGTGAAAAGCTTGTTGTCTGCAAATAATGACCAGCTCGTTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCTGCAGACCTTGCAGCAAAGTTGCCCAATTTAGAGAATTTTAGGGGGAAGGCTCCTCCACAAAGTTCTTTGCTTCAGCAAAACAAATTAAATGGAAATCCATCTTCGACTTCGACCATGGACTTGCTCACTGTACTTTCAGCTACTTTAGCAGCATCAGCTCCAGACGCTCTTGCAATGCTCTCGCAGAAGAGCAGTCTGAGCAGTGATAGTGAAAAAACAAGGTCATCTTGCCCATCTGGTTCTGATCTCCAGAATAGGCCCCTGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACTAGTTACCAGTCTCCTACGGAAGATTCGGATGGACAAGTTCAAGGAACTCGAGTTGGTTTGCCACTTCAGCTGTTTAGCTCTTCACCTGAACATGACACCCCACCAAACTTGGCGGCTTCTAGGAAGTACTTTTCATCTGATAGCAGTAATCCCATTGAAGAGAGGTCTCCGTCATCTTCGCCTCCTCTCCTGCAAAAGTTGTTTCCCGTGCAAAGCACAGAAGAAACTACCAGTAATGAGAAAATACCAATCAGAAAGGAAGTTAGTGGAATTGTTGAGGTTCGAAAGCCTCCTAGTAGCAATATTCCCTTTGAACTCTTTAGAGAGTCAGATAGAGGAGCTGGTGCAAATTCGTTTCGAACTGTTCCATATCAAGCTGGATACACTTCTTCGGGGTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAACTGTTTGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAACTGTCCATCTGAAATGGAAAGCTACATACGGCCTGGTTGTGTGGTTCTGTCGATTTATATGTCTATGTCATCCATTGCATGGGAACAGCTTGAAGAAAATTTGGTTCTGCATGTTAAATCTTTGGTTCGTGACAAAGAGCTTGATTTTTGGAGAAGTGGAAGATTCTTAGTATGCACTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCGTTTATACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAATCTCGGTGTCACCGTTGGCAGTTGTGGGTGGACAAAAGACCTCCTTTTTATTAAAGGGAAGGAATTTGAAAAATCCTGGCACCAAGATTCATTGCACATCTGTGGGTGGCTACATATCCGAAGAAGTAACAGGATTAAGTAGGCAGGGAATATACGATGAGATACACTCTGGAAGTTTCAAAATTGGGGATGCATCACCTACTACTCTTGGTCGTTGTTTTATTGAGGTGGAAAATGGTTTTAGAGGAAATAGTTTCCCTGTTATCATAGCTGATGCTGCCATCTGCAAGGAATTGAGGCATCTCGAGTCCGAGTTTGATGAGTTTAGAGTACATGATATCAGTTCAGAAAGTCATTCATATGTTCCTTCGCAGCCAAGGCTAAAGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGGTCCTCTTCCGAGCTAGATGATCCAGATTTTTTAATAAGGCGATTCAAATTTTTACTCACGTTCTCAGCAGAGAGGGATTTCTGCGTGTTGGTTAAAACACTTCTTGACATTCTGGTGAAAAAGTGCTTGATCACAGATGGACTACCAATGAAATCTTTGGAAATGATATCTGAGATTCAGCTCTTGAATCGGGCCGTGAAAAGGAGGTGCAGGCGGATGGTTGATTTACTCGTCCATTATTATGTATCTGGCTTTGGTGAGTCAGAGAAAAAGTACCTCTTTCCACCAAATGTTATTGGTCCTGGTGGTATTACGCCTCTGCATTTGGCAGCTTCAATGACAGATTCAGATGATATGGTTGATGCACTTACAAATGACCCGCTGGAGATTGGATTGGATTGCTGGCGTTCCCAACTAGATGCAAACGGACAGTCGCCGCAGGCTTATGCTTTAATGAGGGGTAATCATTCTTGTAATGAGCTGGTGGCTCGAAAACGTGGTGACAGAAAGAATGGTCAAGTTTCAGTAAGGATCGGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGGGGCAGGGTGCAAGGAAGATCCTGCTCCAGGTGTGCAGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTGGGAGTGGGACGCACAGGTTGCTTCATAGACCCTATATTCATTCAATGCTTGCTATAGCTGCAGTGTGCGTTTGTGTGTGCCTATTTTTGCGAGGTTCCCCGGACATCGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGGGTATGGGACAATTTAG | 3219 | 45.95 | MEDVGAQVVPPIFIHQTLTSRYTDVPSIAKKRALSYQVPNFHQHNHLHQHHLQQQGQLHAHTWNPKAWDWDSTRFLTKQSSDTVSSDLKRKDDLPAGIPSTLKKKTVEVLDEEDESLRLNLGGGLNLNYVEEPVSKPPKKVRPGSPAGGTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKLMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRVPPSSGNLDIVGLLTVLARAQGKNEDQSVKSLLSANNDQLVQILNKINSLPLPADLAAKLPNLENFRGKAPPQSSLLQQNKLNGNPSSTSTMDLLTVLSATLAASAPDALAMLSQKSSLSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPTEDSDGQVQGTRVGLPLQLFSSSPEHDTPPNLAASRKYFSSDSSNPIEERSPSSSPPLLQKLFPVQSTEETTSNEKIPIRKEVSGIVEVRKPPSSNIPFELFRESDRGAGANSFRTVPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSIYMSMSSIAWEQLEENLVLHVKSLVRDKELDFWRSGRFLVCTGRQLASHKDGKIRLYKSSKAWSNPELISVSPLAVVGGQKTSFLLKGRNLKNPGTKIHCTSVGGYISEEVTGLSRQGIYDEIHSGSFKIGDASPTTLGRCFIEVENGFRGNSFPVIIADAAICKELRHLESEFDEFRVHDISSESHSYVPSQPRLKDEILQFLNELGWLFQRERSSSELDDPDFLIRRFKFLLTFSAERDFCVLVKTLLDILVKKCLITDGLPMKSLEMISEIQLLNRAVKRRCRRMVDLLVHYYVSGFGESEKKYLFPPNVIGPGGITPLHLAASMTDSDDMVDALTNDPLEIGLDCWRSQLDANGQSPQAYALMRGNHSCNELVARKRGDRKNGQVSVRIGNEIEQLEVSSGERGRVQGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI | 1072 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 48054804 | 48061139 | + | Maker00007023 | Lcy9g2376 | 643492 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g2376 | 1072 | MobiDBLite | consensus disorder prediction | 311 | 331 | - | - | |
Lcy9g2376 | 1072 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 68 | 1070 | IPR044817 | GO:0003677(InterPro) | |
Lcy9g2376 | 1072 | ProSiteProfiles | Zinc finger SBP-type profile. | 151 | 228 | IPR004333 | GO:0003677(InterPro) | |
Lcy9g2376 | 1072 | MobiDBLite | consensus disorder prediction | 358 | 382 | - | - | |
Lcy9g2376 | 1072 | Pfam | SBP domain | 154 | 227 | IPR004333 | GO:0003677(InterPro) | |
Lcy9g2376 | 1072 | MobiDBLite | consensus disorder prediction | 308 | 331 | - | - | |
Lcy9g2376 | 1072 | FunFam | Squamosa promoter-binding-like protein 14 | 145 | 215 | - | - | |
Lcy9g2376 | 1072 | Gene3D | - | 145 | 215 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lcy9g2376 | 1072 | MobiDBLite | consensus disorder prediction | 415 | 460 | - | - | |
Lcy9g2376 | 1072 | MobiDBLite | consensus disorder prediction | 223 | 248 | - | - | |
Lcy9g2376 | 1072 | MobiDBLite | consensus disorder prediction | 358 | 460 | - | - | |
Lcy9g2376 | 1072 | MobiDBLite | consensus disorder prediction | 521 | 540 | - | - | |
Lcy9g2376 | 1072 | MobiDBLite | consensus disorder prediction | 390 | 409 | - | - | |
Lcy9g2376 | 1072 | SUPERFAMILY | SBT domain | 152 | 232 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1465 | Lcy-Chr11:38579643 | Lcy9g2376 | Lcy-Chr9:48054804 | 5.41E-28 | dispersed | |
Lcy12g0392 | Lcy-Chr12:4763781 | Lcy9g2376 | Lcy-Chr9:48054804 | 1.03E-124 | dispersed | |
Lcy7g0037 | Lcy-Chr7:297498 | Lcy9g2376 | Lcy-Chr9:48054804 | 9.09E-27 | dispersed | |
Lcy9g1310 | Lcy-Chr9:37855499 | Lcy9g2376 | Lcy-Chr9:48054804 | 4.40E-32 | dispersed | |
Lcy9g2376 | Lcy-Chr9:48054804 | Lcy2g0048 | Lcy-Chr2:352381 | 2.12E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20744 | None | None | None | None | Lcy | TF |
Pathway information
