Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2376 ATGGAGGACGTCGGCGCCCAAGTTGTGCCTCCAATTTTCATCCACCAAACCTTGACCAGTCGCTACACTGATGTGCCTTCCATCGCCAAGAAGCGTGCCTTATCCTATCAGGTCCCCAACTTCCATCAGCACAATCACCTCCACCAGCATCACTTGCAACAGCAGGGTCAACTCCATGCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCACAAGATTCCTCACCAAGCAGTCCTCGGATACTGTCTCCTCCGACCTAAAGAGGAAGGACGATTTGCCTGCTGGTATTCCCTCCACCCTAAAGAAGAAGACGGTGGAGGTTCTGGACGAGGAGGATGAGAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTCGAGGAGCCCGTGTCCAAACCCCCCAAAAAGGTCCGGCCTGGATCTCCCGCCGGTGGCACCTACCCTATGTGCCAGGTCGATAATTGTAAGGAAGATCTGTCGAATGCCAAAGACTATCACCGCAGACATAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACTGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCATCCACTTTCGGAATTTGATGATGGGAAGAGGAGTTGTAGGAGGAGACTTGCGGGGCACAACTGGCGTAGAAGAAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGACCAGGAAGTAGAGTACCCCCAAGCAGTGGAAATTTGGACATCGTCGGTCTATTGACTGTTCTAGCTCGGGCTCAAGGGAAAAACGAAGACCAGAGTGTGAAAAGCTTGTTGTCTGCAAATAATGACCAGCTCGTTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCTGCAGACCTTGCAGCAAAGTTGCCCAATTTAGAGAATTTTAGGGGGAAGGCTCCTCCACAAAGTTCTTTGCTTCAGCAAAACAAATTAAATGGAAATCCATCTTCGACTTCGACCATGGACTTGCTCACTGTACTTTCAGCTACTTTAGCAGCATCAGCTCCAGACGCTCTTGCAATGCTCTCGCAGAAGAGCAGTCTGAGCAGTGATAGTGAAAAAACAAGGTCATCTTGCCCATCTGGTTCTGATCTCCAGAATAGGCCCCTGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACTAGTTACCAGTCTCCTACGGAAGATTCGGATGGACAAGTTCAAGGAACTCGAGTTGGTTTGCCACTTCAGCTGTTTAGCTCTTCACCTGAACATGACACCCCACCAAACTTGGCGGCTTCTAGGAAGTACTTTTCATCTGATAGCAGTAATCCCATTGAAGAGAGGTCTCCGTCATCTTCGCCTCCTCTCCTGCAAAAGTTGTTTCCCGTGCAAAGCACAGAAGAAACTACCAGTAATGAGAAAATACCAATCAGAAAGGAAGTTAGTGGAATTGTTGAGGTTCGAAAGCCTCCTAGTAGCAATATTCCCTTTGAACTCTTTAGAGAGTCAGATAGAGGAGCTGGTGCAAATTCGTTTCGAACTGTTCCATATCAAGCTGGATACACTTCTTCGGGGTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAACTGTTTGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAACTGTCCATCTGAAATGGAAAGCTACATACGGCCTGGTTGTGTGGTTCTGTCGATTTATATGTCTATGTCATCCATTGCATGGGAACAGCTTGAAGAAAATTTGGTTCTGCATGTTAAATCTTTGGTTCGTGACAAAGAGCTTGATTTTTGGAGAAGTGGAAGATTCTTAGTATGCACTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCGTTTATACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAATCTCGGTGTCACCGTTGGCAGTTGTGGGTGGACAAAAGACCTCCTTTTTATTAAAGGGAAGGAATTTGAAAAATCCTGGCACCAAGATTCATTGCACATCTGTGGGTGGCTACATATCCGAAGAAGTAACAGGATTAAGTAGGCAGGGAATATACGATGAGATACACTCTGGAAGTTTCAAAATTGGGGATGCATCACCTACTACTCTTGGTCGTTGTTTTATTGAGGTGGAAAATGGTTTTAGAGGAAATAGTTTCCCTGTTATCATAGCTGATGCTGCCATCTGCAAGGAATTGAGGCATCTCGAGTCCGAGTTTGATGAGTTTAGAGTACATGATATCAGTTCAGAAAGTCATTCATATGTTCCTTCGCAGCCAAGGCTAAAGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGGTCCTCTTCCGAGCTAGATGATCCAGATTTTTTAATAAGGCGATTCAAATTTTTACTCACGTTCTCAGCAGAGAGGGATTTCTGCGTGTTGGTTAAAACACTTCTTGACATTCTGGTGAAAAAGTGCTTGATCACAGATGGACTACCAATGAAATCTTTGGAAATGATATCTGAGATTCAGCTCTTGAATCGGGCCGTGAAAAGGAGGTGCAGGCGGATGGTTGATTTACTCGTCCATTATTATGTATCTGGCTTTGGTGAGTCAGAGAAAAAGTACCTCTTTCCACCAAATGTTATTGGTCCTGGTGGTATTACGCCTCTGCATTTGGCAGCTTCAATGACAGATTCAGATGATATGGTTGATGCACTTACAAATGACCCGCTGGAGATTGGATTGGATTGCTGGCGTTCCCAACTAGATGCAAACGGACAGTCGCCGCAGGCTTATGCTTTAATGAGGGGTAATCATTCTTGTAATGAGCTGGTGGCTCGAAAACGTGGTGACAGAAAGAATGGTCAAGTTTCAGTAAGGATCGGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGGGGCAGGGTGCAAGGAAGATCCTGCTCCAGGTGTGCAGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTGGGAGTGGGACGCACAGGTTGCTTCATAGACCCTATATTCATTCAATGCTTGCTATAGCTGCAGTGTGCGTTTGTGTGTGCCTATTTTTGCGAGGTTCCCCGGACATCGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGGGTATGGGACAATTTAG 3219 45.95 MEDVGAQVVPPIFIHQTLTSRYTDVPSIAKKRALSYQVPNFHQHNHLHQHHLQQQGQLHAHTWNPKAWDWDSTRFLTKQSSDTVSSDLKRKDDLPAGIPSTLKKKTVEVLDEEDESLRLNLGGGLNLNYVEEPVSKPPKKVRPGSPAGGTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKLMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRVPPSSGNLDIVGLLTVLARAQGKNEDQSVKSLLSANNDQLVQILNKINSLPLPADLAAKLPNLENFRGKAPPQSSLLQQNKLNGNPSSTSTMDLLTVLSATLAASAPDALAMLSQKSSLSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPTEDSDGQVQGTRVGLPLQLFSSSPEHDTPPNLAASRKYFSSDSSNPIEERSPSSSPPLLQKLFPVQSTEETTSNEKIPIRKEVSGIVEVRKPPSSNIPFELFRESDRGAGANSFRTVPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSIYMSMSSIAWEQLEENLVLHVKSLVRDKELDFWRSGRFLVCTGRQLASHKDGKIRLYKSSKAWSNPELISVSPLAVVGGQKTSFLLKGRNLKNPGTKIHCTSVGGYISEEVTGLSRQGIYDEIHSGSFKIGDASPTTLGRCFIEVENGFRGNSFPVIIADAAICKELRHLESEFDEFRVHDISSESHSYVPSQPRLKDEILQFLNELGWLFQRERSSSELDDPDFLIRRFKFLLTFSAERDFCVLVKTLLDILVKKCLITDGLPMKSLEMISEIQLLNRAVKRRCRRMVDLLVHYYVSGFGESEKKYLFPPNVIGPGGITPLHLAASMTDSDDMVDALTNDPLEIGLDCWRSQLDANGQSPQAYALMRGNHSCNELVARKRGDRKNGQVSVRIGNEIEQLEVSSGERGRVQGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48054804 48061139 + Maker00007023 Lcy9g2376 643492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 311 331 - -
Lcy9g2376 1072 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 1070 IPR044817 GO:0003677(InterPro)
Lcy9g2376 1072 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677(InterPro)
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 358 382 - -
Lcy9g2376 1072 Pfam SBP domain 154 227 IPR004333 GO:0003677(InterPro)
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 308 331 - -
Lcy9g2376 1072 FunFam Squamosa promoter-binding-like protein 14 145 215 - -
Lcy9g2376 1072 Gene3D - 145 215 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 415 460 - -
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 223 248 - -
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 358 460 - -
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 521 540 - -
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 390 409 - -
Lcy9g2376 1072 SUPERFAMILY SBT domain 152 232 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1465 Lcy-Chr11:38579643 Lcy9g2376 Lcy-Chr9:48054804 5.41E-28 dispersed
Lcy12g0392 Lcy-Chr12:4763781 Lcy9g2376 Lcy-Chr9:48054804 1.03E-124 dispersed
Lcy7g0037 Lcy-Chr7:297498 Lcy9g2376 Lcy-Chr9:48054804 9.09E-27 dispersed
Lcy9g1310 Lcy-Chr9:37855499 Lcy9g2376 Lcy-Chr9:48054804 4.40E-32 dispersed
Lcy9g2376 Lcy-Chr9:48054804 Lcy2g0048 Lcy-Chr2:352381 2.12E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20744 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2376 - - - 0.0