Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2376 ATGGAGGACGTCGGCGCCCAAGTTGTGCCTCCAATTTTCATCCACCAAACCTTGACCAGTCGCTACACTGATGTGCCTTCCATCGCCAAGAAGCGTGCCTTATCCTATCAGGTCCCCAACTTCCATCAGCACAATCACCTCCACCAGCATCACTTGCAACAGCAGGGTCAACTCCATGCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCACAAGATTCCTCACCAAGCAGTCCTCGGATACTGTCTCCTCCGACCTAAAGAGGAAGGACGATTTGCCTGCTGGTATTCCCTCCACCCTAAAGAAGAAGACGGTGGAGGTTCTGGACGAGGAGGATGAGAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTCGAGGAGCCCGTGTCCAAACCCCCCAAAAAGGTCCGGCCTGGATCTCCCGCCGGTGGCACCTACCCTATGTGCCAGGTCGATAATTGTAAGGAAGATCTGTCGAATGCCAAAGACTATCACCGCAGACATAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACTGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCATCCACTTTCGGAATTTGATGATGGGAAGAGGAGTTGTAGGAGGAGACTTGCGGGGCACAACTGGCGTAGAAGAAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGACCAGGAAGTAGAGTACCCCCAAGCAGTGGAAATTTGGACATCGTCGGTCTATTGACTGTTCTAGCTCGGGCTCAAGGGAAAAACGAAGACCAGAGTGTGAAAAGCTTGTTGTCTGCAAATAATGACCAGCTCGTTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCTGCAGACCTTGCAGCAAAGTTGCCCAATTTAGAGAATTTTAGGGGGAAGGCTCCTCCACAAAGTTCTTTGCTTCAGCAAAACAAATTAAATGGAAATCCATCTTCGACTTCGACCATGGACTTGCTCACTGTACTTTCAGCTACTTTAGCAGCATCAGCTCCAGACGCTCTTGCAATGCTCTCGCAGAAGAGCAGTCTGAGCAGTGATAGTGAAAAAACAAGGTCATCTTGCCCATCTGGTTCTGATCTCCAGAATAGGCCCCTGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACTAGTTACCAGTCTCCTACGGAAGATTCGGATGGACAAGTTCAAGGAACTCGAGTTGGTTTGCCACTTCAGCTGTTTAGCTCTTCACCTGAACATGACACCCCACCAAACTTGGCGGCTTCTAGGAAGTACTTTTCATCTGATAGCAGTAATCCCATTGAAGAGAGGTCTCCGTCATCTTCGCCTCCTCTCCTGCAAAAGTTGTTTCCCGTGCAAAGCACAGAAGAAACTACCAGTAATGAGAAAATACCAATCAGAAAGGAAGTTAGTGGAATTGTTGAGGTTCGAAAGCCTCCTAGTAGCAATATTCCCTTTGAACTCTTTAGAGAGTCAGATAGAGGAGCTGGTGCAAATTCGTTTCGAACTGTTCCATATCAAGCTGGATACACTTCTTCGGGGTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAACTGTTTGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCTAACTGTCCATCTGAAATGGAAAGCTACATACGGCCTGGTTGTGTGGTTCTGTCGATTTATATGTCTATGTCATCCATTGCATGGGAACAGCTTGAAGAAAATTTGGTTCTGCATGTTAAATCTTTGGTTCGTGACAAAGAGCTTGATTTTTGGAGAAGTGGAAGATTCTTAGTATGCACTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCGTTTATACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAATCTCGGTGTCACCGTTGGCAGTTGTGGGTGGACAAAAGACCTCCTTTTTATTAAAGGGAAGGAATTTGAAAAATCCTGGCACCAAGATTCATTGCACATCTGTGGGTGGCTACATATCCGAAGAAGTAACAGGATTAAGTAGGCAGGGAATATACGATGAGATACACTCTGGAAGTTTCAAAATTGGGGATGCATCACCTACTACTCTTGGTCGTTGTTTTATTGAGGTGGAAAATGGTTTTAGAGGAAATAGTTTCCCTGTTATCATAGCTGATGCTGCCATCTGCAAGGAATTGAGGCATCTCGAGTCCGAGTTTGATGAGTTTAGAGTACATGATATCAGTTCAGAAAGTCATTCATATGTTCCTTCGCAGCCAAGGCTAAAGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGGTCCTCTTCCGAGCTAGATGATCCAGATTTTTTAATAAGGCGATTCAAATTTTTACTCACGTTCTCAGCAGAGAGGGATTTCTGCGTGTTGGTTAAAACACTTCTTGACATTCTGGTGAAAAAGTGCTTGATCACAGATGGACTACCAATGAAATCTTTGGAAATGATATCTGAGATTCAGCTCTTGAATCGGGCCGTGAAAAGGAGGTGCAGGCGGATGGTTGATTTACTCGTCCATTATTATGTATCTGGCTTTGGTGAGTCAGAGAAAAAGTACCTCTTTCCACCAAATGTTATTGGTCCTGGTGGTATTACGCCTCTGCATTTGGCAGCTTCAATGACAGATTCAGATGATATGGTTGATGCACTTACAAATGACCCGCTGGAGATTGGATTGGATTGCTGGCGTTCCCAACTAGATGCAAACGGACAGTCGCCGCAGGCTTATGCTTTAATGAGGGGTAATCATTCTTGTAATGAGCTGGTGGCTCGAAAACGTGGTGACAGAAAGAATGGTCAAGTTTCAGTAAGGATCGGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGGGGCAGGGTGCAAGGAAGATCCTGCTCCAGGTGTGCAGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTGGGAGTGGGACGCACAGGTTGCTTCATAGACCCTATATTCATTCAATGCTTGCTATAGCTGCAGTGTGCGTTTGTGTGTGCCTATTTTTGCGAGGTTCCCCGGACATCGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGGGTATGGGACAATTTAG 3219 45.95 MEDVGAQVVPPIFIHQTLTSRYTDVPSIAKKRALSYQVPNFHQHNHLHQHHLQQQGQLHAHTWNPKAWDWDSTRFLTKQSSDTVSSDLKRKDDLPAGIPSTLKKKTVEVLDEEDESLRLNLGGGLNLNYVEEPVSKPPKKVRPGSPAGGTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKLMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRVPPSSGNLDIVGLLTVLARAQGKNEDQSVKSLLSANNDQLVQILNKINSLPLPADLAAKLPNLENFRGKAPPQSSLLQQNKLNGNPSSTSTMDLLTVLSATLAASAPDALAMLSQKSSLSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPTEDSDGQVQGTRVGLPLQLFSSSPEHDTPPNLAASRKYFSSDSSNPIEERSPSSSPPLLQKLFPVQSTEETTSNEKIPIRKEVSGIVEVRKPPSSNIPFELFRESDRGAGANSFRTVPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSIYMSMSSIAWEQLEENLVLHVKSLVRDKELDFWRSGRFLVCTGRQLASHKDGKIRLYKSSKAWSNPELISVSPLAVVGGQKTSFLLKGRNLKNPGTKIHCTSVGGYISEEVTGLSRQGIYDEIHSGSFKIGDASPTTLGRCFIEVENGFRGNSFPVIIADAAICKELRHLESEFDEFRVHDISSESHSYVPSQPRLKDEILQFLNELGWLFQRERSSSELDDPDFLIRRFKFLLTFSAERDFCVLVKTLLDILVKKCLITDGLPMKSLEMISEIQLLNRAVKRRCRRMVDLLVHYYVSGFGESEKKYLFPPNVIGPGGITPLHLAASMTDSDDMVDALTNDPLEIGLDCWRSQLDANGQSPQAYALMRGNHSCNELVARKRGDRKNGQVSVRIGNEIEQLEVSSGERGRVQGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48054804 48061139 + Maker00007023 Lcy9g2376 643492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 311 331 - -
Lcy9g2376 1072 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 1070 IPR044817 GO:0003677(InterPro)
Lcy9g2376 1072 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677(InterPro)
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 358 382 - -
Lcy9g2376 1072 Pfam SBP domain 154 227 IPR004333 GO:0003677(InterPro)
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 308 331 - -
Lcy9g2376 1072 FunFam Squamosa promoter-binding-like protein 14 145 215 - -
Lcy9g2376 1072 Gene3D - 145 215 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 415 460 - -
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 223 248 - -
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 358 460 - -
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 521 540 - -
Lcy9g2376 1072 MobiDBLite consensus disorder prediction 390 409 - -
Lcy9g2376 1072 SUPERFAMILY SBT domain 152 232 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2376 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1465 Lcy-Chr11:38579643 Lcy9g2376 Lcy-Chr9:48054804 5.41E-28 dispersed
Lcy12g0392 Lcy-Chr12:4763781 Lcy9g2376 Lcy-Chr9:48054804 1.03E-124 dispersed
Lcy7g0037 Lcy-Chr7:297498 Lcy9g2376 Lcy-Chr9:48054804 9.09E-27 dispersed
Lcy9g1310 Lcy-Chr9:37855499 Lcy9g2376 Lcy-Chr9:48054804 4.40E-32 dispersed
Lcy9g2376 Lcy-Chr9:48054804 Lcy2g0048 Lcy-Chr2:352381 2.12E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g0392 . 180 1044 SBP-box Gene Family AT2G47070 54.0 6.0e-238 821.2
Lcy12g0392 . 25 1044 SBP-box Gene Family AT3G60030 53.4 7.9e-272 934.1
Lcy3g1511 . 29 149 SBP-box Gene Family AT5G50570 63.1 8.9e-38 155.2
Lcy9g2376 . 1 1073 SBP-box Gene Family AT1G20980 50.2 3.3e-271 932.2
Lcy12g0392 . 180 1044 SBP-box Gene Family AT2G47070 54.0 6.0e-238 821.2
Lcy12g0392 . 25 1044 SBP-box Gene Family AT3G60030 53.4 7.9e-272 934.1
Lcy3g1511 . 29 149 SBP-box Gene Family AT5G50570 63.1 8.9e-38 155.2
Lcy3g1511 . 29 149 SBP-box Gene Family AT5G50670 63.1 8.9e-38 155.2
Lcy9g2376 . 1 1073 SBP-box Gene Family AT1G20980 50.2 3.3e-271 932.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20744 None None None None Lcy TF