Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2377 ATGTATCTATCCATTGTGTTAATTTCTACTCATTCCAAAATGCTGCATCTTCTTCTGCCATTCATTCTATTATCATCTTCTGCCGCGGTTGACACCAAGCCCGGATGCCCTTCCAACTGTGGAAATGTCACCGTTCCATATCCTTTCGGCATCGGCCTTGGTTGTTACATGGCCACCGGCTTTGACGTAACTTGCAATTCTTCCTACGATCCTCCTTTACTCTTCCTCGGCACTTCCAACCTTCAAGTTCAGCAAATTTCTCTAACCAACCTCCGCATTCGCAACTCCGTCTCTTACAACTGCTACAACCAAGCTGGGGCTCTCATCGGCAGATCCAGCTCTTGGATCAACTTGGGCCGTCTCCCTTTCTACTTCTCCACCACCAACAAGTTCACCGTCATCGGCTGCGACACCTTAGCCTTGATCTCTGGCTCCCAGGGCCTCTCCTACACCGGCGGATGCATCTCCCTCTGCTCCAACAAGGAAACCGTCATCAATGGCTCTTGCTCTGGAATCGGCTGCTGCCAGACCGCCGTCCCCCGAGGCCTCAAGCGCTTCCAGAGCAACATTGGGAACCTCAACAACCACACCTTAACCTGGCAGTACAATCCTTGTAGCTACGCCTTCCTGGTTGACCAAGACCGCTACACCTTTGAGACGTCTGATCTGGCCGATCCCAACTTCCTGTCCACCATTACAAGCTTGCCGGTGGTTCTGGACTGGGTGGTGGGTAATCAGACGTGTGAAGAGGCTCGGAAAGACTCGTCAGCGTATGTTTGCCAGGCCAATTCCGAATGTTACGATTCAGAGAGTGGAAGCGGCTATCAATGTCGGTGCAGCCAAGGCTACCAAGGGAACCCATATCTCATTCCTGGATGCCAAGTTATTACTGTTCATGCCCCCACGATTCCTATGGTGACGGCAGGAAGGACGGCAAGGGCTGCATCACCAAAACTAAGCAATTTCCGCTTATTCAGCTCACTCTCGGTGACCACTCCTTCTTCCAAAGTCTCACTCTCTAATATTTTCTTTTCATTCATTCTCCTACTCCTAACAAGTAACAACTCCATCCTCTCAGGTCTTGGTTCCGGTCTCCTATTTCTTATCGTCACTGCCACTTGGCTTTACTTCACCATCAAGAAGAGGAACCTCATTAAACTCAGAGAGAAATTCTTCCACCAGAACGGGGGCTTGTTACTGCGCCAGCAGTTATCACAACACGAAGGTGCTGTTGAATCCACAAAAATCTTCACAGCGGAGGAGCTAGAGAAAGCGACCGACAACTATGCCGAGACTAGAATCCTGGGACGAGGCGGAAACGGGACTGTGTATAAAGGAATTCTACCCGACGGCAAGATAGTCGCCATTAAGAAGTCCAAGATAGCGGATGAAAGCCAAATCGAACAGTTCATCAACGAAGTCATAATTCTGGCCCAAATCAACCACCGGAATGTGGTGAAGCTCATGGGATGCTGCCTCGAGACGGAGGTTCCTCTGCTTGTCTACGAATTCGTATCGAATGGGACTCTACACAGCCATATTCATGAGAAGAACAGCTTCAATAACAATTCCATGTCTTGGGAAAACCGTTTGAGAATAGCAACTGAAACAGCCGCAGCTCTTTCGTACCTGCACTCGGCAGCATCGACACCCATAATTCACAGAGACGTGAAGTCGGCGAACATATTGTTGGACAAGAAATGCACGGCGAAGGTAGCCGATTTTGGAGCATCGAGGTTTATCCCAATCGATCAGTCGCAGATAACAACACTGGTTCAAGGGACGTTCGGTTACCTAGACCCGGAATATTTCCAAACGAGTCAATTGACAGAGAAGAGCGATGTGTACAGCTTTGGGGTGGTGCTGGTGGAGCTGTTAACGGGGGAGTTGCCAGTGTCGTTCGAGAGATCGGAATCCCAAAGAAACCTGTCGTCGTATTTTGTGGCGTCAGTGCGGCAGAAGAGGCTGTTTAGGGTCGTGGACGGGAGGGTGTTGAGGGAAGGGAAGAGAGAGCAGCTGGTGGGAATGGCGGAGCTGGCGAGGAGGTGCCTGAAGCTGAAGGGGGAAGAGAGGCCGACGATGAGAGAAGTGGTGTCGGAGCTGGAGAGGTTGAAAGGGGATGGAAGAAACCGAGAGGAAACGGAGAGTTTGCTGGAACAGGAACAGGAACAGGAACAGGAACAGGAGCAGGAGGGAGAGGCCTCAGACTCACAGGATCTGTACCCCCCATGGATACCCAGCTCCATCGGATCCTCCACATCCCAACCCCATTCTCTGGGGTTGCCTACCTCCTTCCACCTCTCACGTTGA 2310 51.04 MYLSIVLISTHSKMLHLLLPFILLSSSAAVDTKPGCPSNCGNVTVPYPFGIGLGCYMATGFDVTCNSSYDPPLLFLGTSNLQVQQISLTNLRIRNSVSYNCYNQAGALIGRSSSWINLGRLPFYFSTTNKFTVIGCDTLALISGSQGLSYTGGCISLCSNKETVINGSCSGIGCCQTAVPRGLKRFQSNIGNLNNHTLTWQYNPCSYAFLVDQDRYTFETSDLADPNFLSTITSLPVVLDWVVGNQTCEEARKDSSAYVCQANSECYDSESGSGYQCRCSQGYQGNPYLIPGCQVITVHAPTIPMVTAGRTARAASPKLSNFRLFSSLSVTTPSSKVSLSNIFFSFILLLLTSNNSILSGLGSGLLFLIVTATWLYFTIKKRNLIKLREKFFHQNGGLLLRQQLSQHEGAVESTKIFTAEELEKATDNYAETRILGRGGNGTVYKGILPDGKIVAIKKSKIADESQIEQFINEVIILAQINHRNVVKLMGCCLETEVPLLVYEFVSNGTLHSHIHEKNSFNNNSMSWENRLRIATETAAALSYLHSAASTPIIHRDVKSANILLDKKCTAKVADFGASRFIPIDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLVELLTGELPVSFERSESQRNLSSYFVASVRQKRLFRVVDGRVLREGKREQLVGMAELARRCLKLKGEERPTMREVVSELERLKGDGRNREETESLLEQEQEQEQEQEQEGEASDSQDLYPPWIPSSIGSSTSQPHSLGLPTSFHLSR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48062212 48064917 + Maker00007185 Lcy9g2377 643493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2377 769 Pfam Wall-associated kinase 167 243 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
Lcy9g2377 769 FunFam Wall-associated receptor kinase 2 246 297 - -
Lcy9g2377 769 Gene3D Phosphorylase Kinase; domain 1 403 504 - -
Lcy9g2377 769 MobiDBLite consensus disorder prediction 741 769 - -
Lcy9g2377 769 MobiDBLite consensus disorder prediction 718 734 - -
Lcy9g2377 769 Coils Coil 710 738 - -
Lcy9g2377 769 Pfam Protein kinase domain 429 699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2377 769 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 720 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy9g2377 769 CDD STKc_IRAK 435 704 - -
Lcy9g2377 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g2377 769 Gene3D Transferase(Phosphotransferase) domain 1 505 731 - -
Lcy9g2377 769 FunFam Wall-associated receptor kinase 2 505 729 - -
Lcy9g2377 769 ProSiteProfiles Protein kinase domain profile. 429 704 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2377 769 ProSitePatterns Protein kinases ATP-binding region signature. 435 458 IPR017441 GO:0005524(InterPro)
Lcy9g2377 769 SUPERFAMILY Protein kinase-like (PK-like) 410 702 IPR011009 -
Lcy9g2377 769 MobiDBLite consensus disorder prediction 700 769 - -
Lcy9g2377 769 SMART serkin_6 429 704 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g2377 769 MobiDBLite consensus disorder prediction 700 717 - -
Lcy9g2377 769 Pfam Wall-associated receptor kinase galacturonan-binding 36 93 IPR025287 GO:0030247(InterPro)
Lcy9g2377 769 FunFam Wall-associated receptor kinase 2 399 504 - -
Lcy9g2377 769 ProSiteProfiles EGF-like domain profile. 252 294 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1540 Lcy-Chr2:20502747 Lcy9g2377 Lcy-Chr9:48062212 6.52E-113 dispersed
Lcy2g1541 Lcy-Chr2:20557177 Lcy9g2377 Lcy-Chr9:48062212 6.34E-114 dispersed
Lcy9g2377 Lcy-Chr9:48062212 Lcy9g1020 Lcy-Chr9:33629571 1.42E-61 dispersed
Lcy9g2377 Lcy-Chr9:48062212 Lcy9g1023 Lcy-Chr9:33684062 7.17E-193 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66236 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2377 - - - 0.0