Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2389 ATGGCAGTGAATTTAGGTCTAGTGGTTGGATCTCAGAATCAAAATGAACTTATGGTTATCCATCGGGATCGCGAATCTGTTCCTATTACTTTGCAGCATGTAAGTGGACACATATGCCATATATGCGAAGATGATGTGGGGATTAATATTGATGGAGAAGTTTTTGTAGCCTGCGACGAGTGTGCCTTTCCCATCTGCAAGACATGTTACGAGTACGAGCGCAGCGAAGGAAGTCAAGTATGTCCTCAGTGCAAGACAAGATTGAAGCGTCTCAAGGGTCACGCCCGAGTAGAAGGCGATGAAGAAGAAGATGATATCGATGACCTGGAGAATGAACTCAATTATAGCGGTCGACGCAGGGAGCAACGATTAGTCAAATCAGTTGCTGCACGCCTTCCTGGGCAAATTAGCTGTGGTGCCCCTAATTCCAATATTCATCAGGTTGGTGCCATTCAATTAGGTATGGAGCCATGTGACAAGAGTCTCCATCCCTTTGTCCTACCCATGTTCACGTATCCTTTCAAACTTCTAGGTGCTCATAGTTATGGTAGTACAATGGAGAATTGGAATGGAAAACAAGAAAGGTGGAGTGGAGATAATAGCAAAAACTGGGAGATGAATAAAGGCGATGATGTTTTGGACCCTCCCTTACAGACTTTGTCGAGAAAGGTACCAATTTCATCAAGGCAGATAAACCCATACCGCATGATCATCATCATTCGACTGGTTGTTCTCGGGTTCTTTCTCCATTATCGAGTAACTAATCCTGTTTATGATGCATATGCACTGTGGCTCATATCTGTAATTTGTGAGATTTGGTTTGCACTTTCGTGGATTTGCGGTCAATTTTCAAAGTGGCTCCCTGTTGAGAGGGAAACATATATGGACAGATTATCTTTAAGATATGAGAGAGAAGGCCAGCCTTCTCAGCTCTCTCCGGTGGACATTTTTGTCAGTATAGTGGATCCATCCAAAGATCCCCCATTGGTGATTGCAAACACAGTGCTTTCCATCCTTGCAGTGGATTACCCTAATGATAAGGTTTCATGTTATGTTTCTGATGATGGTGCAGCCATGCTTACATTTGAGGTGCTCTCTGAAACCTCTGAATTTGCTAGGAAATGGGTCCCTTTCTGCAAAAAGTACAATCTTGAGCCTAGGGCACCAGAATGGTATTTTTCTAAGAGCTTAGATTACTTCAATGATAAGGTTCTCCCATCATTCGTGAAGGAAAGGAGGGCCATGAAGAGAGAATACGAGGAATTCAAGGTTAGAATCAATTCTTTGGTCGTAAAAGCTCGTATGGCCCTGAAGGAAGGACAAACAATGCAAGATGGAGGTCTATGGCCCGGTAACGATGTCCGCGATCACCCCGGGATGATTCAGATTCTTCTTGGCCAAGATGGAGGATATGAAAATGATGATCAGAGTGAGTTGCCACGCCTAGTGTACGTCGCTAGAGAAAAAAGGCTTGGCTTTAACCACCAAGAAAAGTCTGGAGCTATGAATGTGCTTGTCAGAGTGTCTGCTGTGTTGAGTAATGCACCTTACTTGTTGAAGTTAGACTGCGAGAATTATATAAATAATAGCAAGGTTCTTAGAGAAGCAATGTGCTTCATGATGGATCCACAACTGGGAAAGCGACTGTGCTACGTGCAGTTCCCACGTGGCAATGCAAAGAGGAATAGCGTATTTCGTAACATTACGATGAGAGGTTTAGATGGAATCCAAGGGCCTGTATGTGTGGGAACTGGGTGTGTCTTCCGAAGGCAGGCTCTATATGGCTATGATGCACCCAGAAAAAGGAAGCCAACAACAAGGACAAAGGACTGCTGGTGTTGCGGGTGGTGTTCTAGAAAGACAACTAAGGAGACCAGCTGCAGAAGTGACTTGGAGAGAAATTCAAGAGAGGGAGATCCCGGAACTGAGTGTGCTTTGATGGGTATGGAAAAGACATTTGGGCAGTCTCCTGTTTTTGTATCATCTATTCTGTCTCTGCTTGAAGATGGTGGAACACCAACACCAACACCAACAGGTGCTACCTCAGCATCTTTGCTTAAGGAAGCTCTCCACGTCTCTGGTTGTGGCTATGAAGATAGAACGGAATGGGGTAGAGAGGTTGGGTGGATCTATGGATCAGTTACAGAGGACATGTTGACGGGTTTTAAGATGCACTGCAGTGGATGGCGATCCGTGTACTGTGCCCCTGCAACGCCTGCGTTTGAAGGATCTGCCGCCATGAATCTTTCTGGCCGTCTGAATCAAGTCTTCCGCTTGGCCCTTGGTTCCATGGAAATATTTTTTAGTAGGCATTGCCCTCTCTGGTATGGCTATGGAGGAGGTTTGAAGTGGTTCCAACGACTTTCCTACATAAATGCCATTACGTATCCCTGGACGTCGATACCATTGTCGGCTTATTGCACTCTACCAGCCGTCTGCTTGGTGACAGGGAAATTTATCTTTCCGGAGGTCATGCTGGGTCGTGTGGGTAGCTTGTGCTTTCTGTCCCTTTTCCTATGCACCCTGGCGACTGCTATGCTGGAAATGAGATGGAGTGGAGTGGGTATTGATGAATGGTGGAGAAATCAACAATTCTGGGTAATTGGAGGGGTTTCAGGACATCTGCTTGCCGTGTTTCAAGGACTGTTAAAGGTATTAGTTGGGGTCGATACAAACCTGGCAATTAAATGGACCACATTACTCATCCCGCCAACAACCCTGCTGATTATAAACTTGATAGGAGTTGTGGCTGGAGTTTCAAATGCTATTAATAACGGACATGAATCATTGGCGCCGTTGCTTGGTAAGCTCTTCTTTGCGTTATGGGTCATTGTGCACCTCTATCCTTTCTTCAAGCCTCTACTGGGTCGGCACAACAACACTCCCACAATTGCAATAGTTTGGTCAATCTTGCTCGCCTTCATCTTCTCCCTGTCGTGGGTTCTCATAGATCCACTTTTGCACAACCCAAATGGTCCTCTGCTACAGGAATGTGGCCTGGAATGTAATTAA 3012 45.39 MAVNLGLVVGSQNQNELMVIHRDRESVPITLQHVSGHICHICEDDVGINIDGEVFVACDECAFPICKTCYEYERSEGSQVCPQCKTRLKRLKGHARVEGDEEEDDIDDLENELNYSGRRREQRLVKSVAARLPGQISCGAPNSNIHQVGAIQLGMEPCDKSLHPFVLPMFTYPFKLLGAHSYGSTMENWNGKQERWSGDNSKNWEMNKGDDVLDPPLQTLSRKVPISSRQINPYRMIIIIRLVVLGFFLHYRVTNPVYDAYALWLISVICEIWFALSWICGQFSKWLPVERETYMDRLSLRYEREGQPSQLSPVDIFVSIVDPSKDPPLVIANTVLSILAVDYPNDKVSCYVSDDGAAMLTFEVLSETSEFARKWVPFCKKYNLEPRAPEWYFSKSLDYFNDKVLPSFVKERRAMKREYEEFKVRINSLVVKARMALKEGQTMQDGGLWPGNDVRDHPGMIQILLGQDGGYENDDQSELPRLVYVAREKRLGFNHQEKSGAMNVLVRVSAVLSNAPYLLKLDCENYINNSKVLREAMCFMMDPQLGKRLCYVQFPRGNAKRNSVFRNITMRGLDGIQGPVCVGTGCVFRRQALYGYDAPRKRKPTTRTKDCWCCGWCSRKTTKETSCRSDLERNSREGDPGTECALMGMEKTFGQSPVFVSSILSLLEDGGTPTPTPTGATSASLLKEALHVSGCGYEDRTEWGREVGWIYGSVTEDMLTGFKMHCSGWRSVYCAPATPAFEGSAAMNLSGRLNQVFRLALGSMEIFFSRHCPLWYGYGGGLKWFQRLSYINAITYPWTSIPLSAYCTLPAVCLVTGKFIFPEVMLGRVGSLCFLSLFLCTLATAMLEMRWSGVGIDEWWRNQQFWVIGGVSGHLLAVFQGLLKVLVGVDTNLAIKWTTLLIPPTTLLIINLIGVVAGVSNAINNGHESLAPLLGKLFFALWVIVHLYPFFKPLLGRHNNTPTIAIVWSILLAFIFSLSWVLIDPLLHNPNGPLLQECGLECN 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48147611 48152513 + Maker00007172 Lcy9g2389 643505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2389 1003 Pfam Cellulose synthase 314 993 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lcy9g2389 1003 Coils Coil 92 112 - -
Lcy9g2389 1003 CDD mRING-HC-C4C4_CesA 37 87 - -
Lcy9g2389 1003 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 456 601 IPR029044 -
Lcy9g2389 1003 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
Lcy9g2389 1003 SUPERFAMILY RING/U-box 26 111 - -
Lcy9g2389 1003 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 234 971 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lcy9g2389 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Lcy9g2389 1003 SUPERFAMILY Nucleotide-diphospho-sugar transferases 318 798 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1092 Lcy-Chr9:34864206 Lcy9g2389 Lcy-Chr9:48147611 4.68E-84 dispersed
Lcy9g1827 Lcy-Chr9:43369630 Lcy9g2389 Lcy-Chr9:48147611 0 dispersed
Lcy9g2389 Lcy-Chr9:48147611 Lcy9g2392 Lcy-Chr9:48169987 7.84E-49 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2389 K10999 - vvi:100242715 1349.34