Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g2392 ATGGTACTCTTCGACCCTTCCGAGTACCGAATCCAAATCCCTCCCACTCCCGAAGATCAAGATAGCGATCATCCTGGTCCAAATATTTCTAATCAGCCTCACCCCCCAAATTCCACTGCTGCCAGTACTATAGCTTCCACTACGGCAGCATTGACCACTTCATCTTCACATCTTTCTGAGCCCCTTGACGAGGACCTCTTTTCCGACCTCACGCTCGTCACTTCCACGCACAAGGACCAACCTAGACATCAAACTCAAATCCAGTTTGACCAGAATTCTCTCCTGATCGCCGATCCTTCTCAAGCTTCCACAATTGTGAAAACCCCTGGTTCAACTGTAGCAGAAACAACAGATAGAGACCGAGGAGTCGTCTCGGTCTCTCGACAGATTTCGAGAAGGAAAAGGAGACCTGGCTTGCGAATTGGCTATGGCAGAGATGTCCATACCCCAAATCCCGCTCCCGATCTTCATTCTCCGCATTTCAATAATCACACTCATGGCGATGGTGACGATGACCAGTACCCTGATGCTTTATCTCAGATCCAACCATCTACTTCTCCACCACAGACCTTAAGCTCGCATGGTTCTTCAGTAGAGAACATGGAATCCACTAATTATGTAGCTCAAGAAGATGACGTAACGGGACGTCAAAACCAACAAGAGGCTAATCAAAATAGCGTTGAGGCTGAAGTGTACAATTCACCCGAGTTTAAATTGGAGCAAGTTAGGATTCAGATCTCTAAGAACCTGAGTCGTGCTCGTAACTCGGTCGCCTCTGTATCTGCCTCCAGGAAGGATGTTATCCAACGGAGACGCAAAATTATGGATAATCTAAAAATTTCATCAGACAGGTACTCCCATCTTGAAAAGCAGTTGGAGGAAGCCTGCGAAGCCGAAGATTTTGAAACCGCAGAAAGGCTTAGCGAGAGCCTTGCTTCTGCTGAGCGAGAAAAACAAGCCTTCCTCACCGAACTAAAAGATGCTGAAGCCTTATGTGACGCAATGGATTCCAGAATGCACGAGGTTTTGGACTTCTTGATTGCGACGGAGGAAAAATGTGATTCTCTGCTCCAAACTTTTGCTGTGGATGCTGCAAATAATGTTGTTTTAGCCTTAAATATTGCAGAGGCAGAGTCTGCAAAAAAATTGGAAAAATGGCATTTGTCAAATGAAGGCTTGGAGGCCAAGAAGATGGAAACTGAAATCGAGTCACTAATTATTCAAGAGTCTTGCATGGTCTTGAATGATTCTGTTGAACTTTTGGTTGAGGATGACAGAAGAGAGAAAAATGTTCTTTGTCAAAGAAAGATCGTGTTGACAGATGAACTTGAGAAATTACTAGCTCTGGTGGAAGAGAAGAAAAGAGAGATAGAACAAAACGATTCTCTGATTGATGCTGTTGAGAAAAGAATTTCCGTTGCAATTTCTGGTTTTCAGCATATGCAATCAAACATGGATGCAAAATATAATTCTTTACAATCAACCCTCTCTCAGATGCATTTAGAAAGTCGAGCTCTTTCAGTTAAAAGAAGGGAAATTGATGAATTTCTCAATCTGGAAAAGGAAAAAGGAGCGACATTGAAGAAAAAGGCTCAACTTTCCATAGAAGATGCAGAAGCATACAGAGAAGTTGCTAGGCTGAGAAAATCTCTGTTGTCTAACATCTTGAAAATAAGGGAAGATAAAGCTACTCTTTCTCAAACTGAGAATGAGCTCTCCAAGGATGTTCAAATGCTAGAGCAAGAGTTTCATTCTGCAAGTTCTTCTCTCCAGGTCACGACTGGTATGCTGGAAATGAGATGGAGTGGAGTGGATATTGATGAATGGTGGAGAAATCAACAATTCTGGGTAATGGGAGGAGTTTCAGAACATCTGCTTGCCGTGTTTCAAGGGCTGTTAAAGGTATTACTTGGGGTCGATACAGACCTGGCAATTAAATGGACCACATTACTCATCCCGCCAACAATCCTGCCGATTATAAACTTGATAGGAGTTGTGGCTAGAGTTTCAAATGCTATTAATAACGGACATGAATCATTGGCGTCGTTGCTCGGTAAGCTCTTCTTTGCGTTATGGGTCATTGTATATATGGGAATAGTATTAGATTATGAGTAA 2115 42.93 MVLFDPSEYRIQIPPTPEDQDSDHPGPNISNQPHPPNSTAASTIASTTAALTTSSSHLSEPLDEDLFSDLTLVTSTHKDQPRHQTQIQFDQNSLLIADPSQASTIVKTPGSTVAETTDRDRGVVSVSRQISRRKRRPGLRIGYGRDVHTPNPAPDLHSPHFNNHTHGDGDDDQYPDALSQIQPSTSPPQTLSSHGSSVENMESTNYVAQEDDVTGRQNQQEANQNSVEAEVYNSPEFKLEQVRIQISKNLSRARNSVASVSASRKDVIQRRRKIMDNLKISSDRYSHLEKQLEEACEAEDFETAERLSESLASAEREKQAFLTELKDAEALCDAMDSRMHEVLDFLIATEEKCDSLLQTFAVDAANNVVLALNIAEAESAKKLEKWHLSNEGLEAKKMETEIESLIIQESCMVLNDSVELLVEDDRREKNVLCQRKIVLTDELEKLLALVEEKKREIEQNDSLIDAVEKRISVAISGFQHMQSNMDAKYNSLQSTLSQMHLESRALSVKRREIDEFLNLEKEKGATLKKKAQLSIEDAEAYREVARLRKSLLSNILKIREDKATLSQTENELSKDVQMLEQEFHSASSSLQVTTGMLEMRWSGVDIDEWWRNQQFWVMGGVSEHLLAVFQGLLKVLLGVDTDLAIKWTTLLIPPTILPIINLIGVVARVSNAINNGHESLASLLGKLFFALWVIVYMGIVLDYE 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48169987 48173383 - Maker00007180 Lcy9g2392 643508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g2392 704 MobiDBLite consensus disorder prediction 109 200 - -
Lcy9g2392 704 MobiDBLite consensus disorder prediction 23 60 - -
Lcy9g2392 704 Pfam Cellulose synthase 592 697 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lcy9g2392 704 Coils Coil 436 470 - -
Lcy9g2392 704 MobiDBLite consensus disorder prediction 177 200 - -
Lcy9g2392 704 Coils Coil 304 331 - -
Lcy9g2392 704 MobiDBLite consensus disorder prediction 1 60 - -
Lcy9g2392 704 Coils Coil 562 582 - -
Lcy9g2392 704 PANTHER NEUROFILAMENT LIGHT PROTEIN 1 591 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g2389 Lcy-Chr9:48147611 Lcy9g2392 Lcy-Chr9:48169987 7.84E-49 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g2392 - - - 0.0