Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00004 ATGGACAACCACGGAGCCGGTAGTTATTTCGTGGACGAGAAGGCCGTTCTCGTCGAGAACATTTTCTTCGACTTCCTTAAGAGTTTTCGCTTCAATGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCCAACACCATGTTTATTGATTTCGCTCACCTCATGGGCTCCAATAATCTTCTTCACATTGCAATCGCCGACGAATATCTGAGGTCTTGCTTTGCTTTTCAGTTTGAACCGTACCTGAAGAACGCTTGTAAGCGATTCGTAATGGATCAGAATCCTTCTTTCATCGCTGACGATAACCCGTTCAAGGACATAAATGTCGCTTTCTTCAACATTCCTGTTTCTAAAAGGTACCTCCTGGACCCTTCTCCTCCCCGACATATAGCTCCCCCAACGTTAACTAAGCAATACATCTGTCTGAACTCGATGAGCATCATGGAAAGCTTGTTAAAACGGTCATTGATTGGTGCCTGTTGGCATCGTACTCCCAACTATAGGTTGAGAGAATTGACTACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTTGAACAACAATTTAAGTACACCGAGCCAACAATATGCATGAACCCAACCTGTTCGAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCAGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCGGCTGGCTCTCTTCCACGATCTTTGGATGTTATTCTCCGCCATGAAATGGTCGAACGAGCTAGGGCTGGGGACACGGTCATCTTCACAGGTACGGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCGGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAGAAACTCTGCGGTAGGACATGAAGGAATGAGGGGGCTACGAGCACTAGGAGTTTTAGATGGTAGAAGGAATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAATTTACCATTGGAGAGCTTGATGACGTCCAAAGAATGAGGAATACGCCCGACTTTTTCAACAGACTTGTTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATCCTGCTGATGCTATTAGGTGGCGTCCACAAGTTAACTCATGAAGGCATTAACCTTCGAGGTGACATCAATGTTTGTATAGTAGGAGATCCAAGCTGTGCGAAGTCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGAGAGTTTTGTATTGAGGCTGGTGCCCTGATGCTTGCTGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATTACAAAAGCCGGAATACAGGCAACACTAAATGCTAGGACATCAATCCTTGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAATCCAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTTTATCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCATATTGCACACCACATTGTGAGAGTACATCAGAAGCATGAAGATGCCCTTTCTCCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCTGGAAGTAGGGTTGCCTATCGCATGACTGTCAGGCAGCTCGAAGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTGAGTCCTTATCGGAAAATTTGTTTAAATCAGGCAACAATTTTGGAACTTTTCTTGAAAACTGCATTTACAGGTTCAATCGCGCCATGTGCGTTTAGCAGTGACTTTACTGAAAACGTCAATAATCAGGCAAGTAGCCAGAAAAACTTCAAAGATTTCCTGTCAATGCACACTTTTCTCCGATTTCTTGGATGTGTGGAATCTAGCGAGATTGACCTCTCTGAATTTGAAGAAACTAATGGAGATGGAGATGGTGATAATAATGTCAATGATGGGCCTAATGAGGTTGATGCTGAACCTAGGAACGGTGCAACAGAGCCAACTACTGGAAATAGTGAAATATGTTCAGGTTCTGGAAGTAGTCAACATAAGGAGAAACTTCTTGTGAGTGATGAATATTTTCAGAGGGTTACTCAAGCCCTTGTCATGTGCCTCAGGCAACACGAAGAACATGTGATGCAAGAAGGACTTGGGCTAGCGGGAATGAGGCAGAGAGACTTAATTGAATGGTATGTGGATCAACAGAACGAGAGAAATAGCTATAGCTCCATGGAGGAGGCAGATAAAGAAATTAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTAAACGAAGGCCATTTGATAGTGGTAGATGACGGGAGGCCAGTGGATGGCGAGGTTGAAGGCGAACCACCATTAGTAAGAATTAGAAATAACAGGATTTTAGCTGTGGCTCCTAATTATGTCGTTGATTGA 2772 43.61 MDNHGAGSYFVDEKAVLVENIFFDFLKSFRFNGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMGSNNLLHIAIADEYLRSCFAFQFEPYLKNACKRFVMDQNPSFIADDNPFKDINVAFFNIPVSKRYLLDPSPPRHIAPPTLTKQYICLNSMSIMESLLKRSLIGACWHRTPNYRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERRNSAVGHEGMRGLRALGVLDGRRNFDIRNRKKDADEDNQQFTIGELDDVQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVSPYRKICLNQATILELFLKTAFTGSIAPCAFSSDFTENVNNQASSQKNFKDFLSMHTFLRFLGCVESSEIDLSEFEETNGDGDGDNNVNDGPNEVDAEPRNGATEPTTGNSEICSGSGSSQHKEKLLVSDEYFQRVTQALVMCLRQHEEHVMQEGLGLAGMRQRDLIEWYVDQQNERNSYSSMEEADKEIKLVRAIIQHLIVNEGHLIVVDDGRPVDGEVEGEPPLVRIRNNRILAVAPNYVVD 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 97300 104162 - Lsi01G000040.1 Lsi01g00004 652662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00004 923 Pfam MCM6 C-terminal winged-helix domain 804 922 IPR041024 -
Lsi01g00004 923 Pfam MCM AAA-lid domain 610 680 IPR041562 -
Lsi01g00004 923 Gene3D - 204 255 - -
Lsi01g00004 923 MobiDBLite consensus disorder prediction 782 799 - -
Lsi01g00004 923 CDD MCM6 388 681 - -
Lsi01g00004 923 SUPERFAMILY Nucleic acid-binding proteins 22 307 IPR012340 -
Lsi01g00004 923 ProSitePatterns MCM family signature. 494 502 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lsi01g00004 923 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 12 873 - -
Lsi01g00004 923 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 174 186 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lsi01g00004 923 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 277 288 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lsi01g00004 923 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 224 241 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lsi01g00004 923 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 336 357 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lsi01g00004 923 MobiDBLite consensus disorder prediction 754 799 - -
Lsi01g00004 923 ProSiteProfiles MCM family domain profile. 385 591 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi01g00004 923 Pfam MCM N-terminal domain 21 121 IPR027925 -
Lsi01g00004 923 PRINTS Mini-chromosome maintenance (MCM) protein family signature 486 500 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi01g00004 923 PRINTS Mini-chromosome maintenance (MCM) protein family signature 538 550 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi01g00004 923 PRINTS Mini-chromosome maintenance (MCM) protein family signature 426 441 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi01g00004 923 PRINTS Mini-chromosome maintenance (MCM) protein family signature 514 527 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi01g00004 923 PRINTS Mini-chromosome maintenance (MCM) protein family signature 565 573 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi01g00004 923 Gene3D - 800 923 - -
Lsi01g00004 923 Gene3D - 10 124 - -
Lsi01g00004 923 Pfam MCM OB domain 177 305 IPR033762 -
Lsi01g00004 923 SMART mcm 173 692 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi01g00004 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 674 IPR027417 -
Lsi01g00004 923 Gene3D - 177 305 IPR012340 -
Lsi01g00004 923 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 12 873 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi01g00004 923 Pfam MCM P-loop domain 374 595 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi01g00004 923 Gene3D - 371 683 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00004 Lsi-Chr1:97300 Lsi02g02475 Lsi-Chr2:31241043 1.44E-108 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00004 K02542 - csv:101219775 1424.45