Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00038 ATGGCGCCGGGCCTCAGAGACCTCCAGCTCGCCCAGGTCGCCGCCGCAGACCGTCGCCCGCCGGCTATTTCTGCGGCTGATGAAATTCCAGACGATCTTGAGGATGTGCGTTTGCTCGATTCATATGAGAGGCAGGATGAGAATTTGGGCAAAATTGGGGATGGTATGAGGAGAGTTCAGGTCACAGTTTCTGGGATGACCTGCGCTGCTTGTTCTAATTCCGTGGAGGCTGCTCTGTGGGGCGTTAATGGCGTTTTGATGGCTTCTGTTGCATTGCTTCAGAACAGAGCTGACGTGGTTTTTGACCCCAACTTGGTTAAGGAGGAAGACATCAAGGAAGCAATAGAAGATGCTGGATTTGAGGCTGAGATAATACCTGAAACCACTTCAGTTGGAAAGAAGTCGCATGGAACACTGGTGGGTCAATTTACCATAGGTGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAAGGCATTTTAAAAGATCTTCCTGGTGTTAGAAGAGCGGTAGTTGCTTTGGCCACATCATTAGGAGAAGTTGAATATGATCCAACAACAACCAGTAAAGACGATATAGTTAACGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGTGAACAAGACAAAATTTTACTAGCGGTTGCAGGCATTGCTGGCGAGGTTGATCTACAGTTTTTGGAAGTCATACTTAGCAACTTGAAAGGGGTGAAACGGTTTCTCTTTGACAGTACATCAGGAAAACTTGAAATTATTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAATTTAAACTGCATGTTACGAGCCCTTACACAAGGTTAACATCTAAAGATGTTGAAGAGGCTAATAACATGTTTCGGCTTTTTATCTCCAGTCTGTCTCTCAGTGTACTCATCTTTCTCCAACGAGTAATATGTCCTCATATTCCTTTAATCTACTCATTGTTACTCTGGCGCTGTGGGCCCTTCCTCATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTTATCATTGGAAAGCGCTTTTATGTTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACTAACATGGATGTCTTGGTTGCTTTGGGTACCACGGCCTCTTACGTCTATTCTGTTTGTGCACTTCTCTATGGTGCAGTCACTGGATTTTGGTCTCCTACTTATTTTGAAACAAGTGCTATGTTGATAACCTTTGTATTATTGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCATTATTGCTTATCCGAGATAAAGTATCTCATGTGCGTCCTAACAAAATATTTGAGGATCAATTGACTGGTCCTTATTTTGTCTTTCTAGGTGGGAATTTGATAGAAGAAAGGGAAATCGATGCTCTGTTAATTCAACCTGGCGATGTGTTGAAGGTTCTTCCTGGTACAAAGATTCCAGCGGATGGTGTTGTTGTTTGGGGTTCAAGTTATATTAATGAGAGTATGGTTACCGGAGAATCTATACCTGTTTTGAAGGAGGTTAACTCACACGTCATTGGGGGTACAATTAATTTTCATGGAGCCCTTCACATTCAAGCAACAAGAGTAGGATCTGATGCAGTTCTGAACCAAATTATTAGTTTGGTTGAGACAGCTCAGATGTCCAAAGCCCCCATTCAGAAATTTGCTGACTTTGTAGCAAGCATATTCGTTCCAACCGTTGTTGCTATGGCATTGTGTACGTACGTTGGAGGAATTCTTGGGGCTTATCCTGCTGAATGGCTCCCAGAAAATGGAAATTACTTTGTATTTTCCCTCATGTTTGCAATAGCAGTGGTAGTTATTGCATGTCCCTGTGCACTAGGCTTGGCTACACCAACTGCTGTCATGGTTGCTACTGGTGTTGGTGCCAGCAATGGTGTCTTGATTAAAGGAGGAGATGCTTTGGAGAGGGCACAAAAGGTTAAGTACGTGATTTTTGATAAAACAGGCACACTAACCCAAGGGAAAGCAACCGTTACTACTGCCAAAGTATTCACTGAAATTTCTCGAGGAGATTTTCTTAAGTTGGTTGCTTCGGCAGAGGCTAGCAGTGAACACCCATTGGGAAAAGCTATAGTTGAGTATGCACGCCATTTCCATTTCTTCGATGAGCCTTCTGCGACCAAAAATGTGGAAAATCAAAGTAAAGAATCTTCTGGATGGCTTTTTGATGTCACAGATTTCTCTGCATTGCCAGGCCAAGGCATCCAGTGCATTATTGAGGGAAAAAGGATTCTGTTAAAGGAAATACGAGTGTTGATATTCTTCCACCCTGGAATATCAAATATGTATAGTTCTATTTCGTGGTTCTGCTTCTCAAAAACCTGTTGTCCTGAACAGGTTGGCGTTGATTTTCTTCCATCCTGGAATATATATTGTTCTATTTTGTGGTTCTGCTTCTCAAAAACGTGTTGTCCTGAACAGGTTGGCAACAGGAAGTTGATGAATGAAAGTGGAATCTCCATAGCACCTCACGTAGATAATTTCGTTATAGAGCTTGAAGAAAGTGCAAAGACAGGCATTCTTGTTGCATGTGATGACAACTTAATTGGAGTTGTGGGAATAGCAGATCCACTGAAGCGAGAAGCTGCAGTTGTTGTTGAGGGTCTTGTAAAAATGGGAGTTTCTCCAGTCATGGTTACAGGGGATAATTGGAGAACGGCTCGAGCTGTCGCCAAAGAGCTTGGTATACAAGATGTGAGGGCAGAAGTAATGCCAGCAGGAAAAGCTGAAGTCATTCAAAACTTCCAAAAGGATGGAAGCACAGTTGCAATGGTAGGTGACGGTATCAATGACTCGCCTGCTCTAGCTGCTTCTGATATCGGAATCGCAATCGGTGCGGGAACTGATATTGCCATTGAGGCAGCCGACTTCGTCCTGATGAGAAATAATTTAGAAGACGTAATAACAGCCATCGATCTCTCAAGGAAGACTTTCAATCGGATTCGATTGAATTACGTGTTTGCAATGGCCTACAATGTAATAGCAATTCCTATCGCTGCCGGAGTCTTCTTTCCTTCTTTGGGGGTTAAATTGCCTCCATGGGCAGCCGGTGCATGCATGGCTTTGTCGTCCGTAAGTGTCGTTTGCTCTTCTTTACTTCTTAGGAGATACAAAAGACCAAGACTTACAACAATACTCGAAATAACTGTAGAATAG 3264 43.29 MAPGLRDLQLAQVAAADRRPPAISAADEIPDDLEDVRLLDSYERQDENLGKIGDGMRRVQVTVSGMTCAACSNSVEAALWGVNGVLMASVALLQNRADVVFDPNLVKEEDIKEAIEDAGFEAEIIPETTSVGKKSHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDPTTTSKDDIVNAIEDAGFEASFVQSSEQDKILLAVAGIAGEVDLQFLEVILSNLKGVKRFLFDSTSGKLEIIFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYTRLTSKDVEEANNMFRLFISSLSLSVLIFLQRVICPHIPLIYSLLLWRCGPFLMDDWLKWALVTVVQFIIGKRFYVAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKVSHVRPNKIFEDQLTGPYFVFLGGNLIEEREIDALLIQPGDVLKVLPGTKIPADGVVVWGSSYINESMVTGESIPVLKEVNSHVIGGTINFHGALHIQATRVGSDAVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTYVGGILGAYPAEWLPENGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVFTEISRGDFLKLVASAEASSEHPLGKAIVEYARHFHFFDEPSATKNVENQSKESSGWLFDVTDFSALPGQGIQCIIEGKRILLKEIRVLIFFHPGISNMYSSISWFCFSKTCCPEQVGVDFLPSWNIYCSILWFCFSKTCCPEQVGNRKLMNESGISIAPHVDNFVIELEESAKTGILVACDDNLIGVVGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKAEVIQNFQKDGSTVAMVGDGINDSPALAASDIGIAIGAGTDIAIEAADFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPIAAGVFFPSLGVKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILEITVE 1087
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 431400 438193 + Lsi01G000380.1 Lsi01g00038 652696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00038 1087 ProSiteProfiles Heavy-metal-associated domain profile. 214 272 IPR006121 GO:0046872
Lsi01g00038 1087 PANTHER HEAVY METAL P-TYPE ATPASE 24 788 - -
Lsi01g00038 1087 PANTHER HEAVY METAL P-TYPE ATPASE 844 1080 - -
Lsi01g00038 1087 Gene3D - 56 128 - -
Lsi01g00038 1087 Pfam haloacid dehalogenase-like hydrolase 676 975 - -
Lsi01g00038 1087 CDD HMA 142 205 IPR006121 GO:0046872
Lsi01g00038 1087 Gene3D - 430 574 - -
Lsi01g00038 1087 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 376 786 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lsi01g00038 1087 Gene3D - 877 1029 IPR023214 -
Lsi01g00038 1087 SUPERFAMILY HAD-like 679 1067 IPR036412 -
Lsi01g00038 1087 ProSitePatterns Heavy-metal-associated domain. 145 174 IPR017969 GO:0046872
Lsi01g00038 1087 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 484 709 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00038 1087 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 860 1042 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00038 1087 TIGRFAM TIGR00003: copper ion binding protein 142 204 IPR006122 GO:0005507
Lsi01g00038 1087 TIGRFAM TIGR00003: copper ion binding protein 59 122 IPR006122 GO:0005507
Lsi01g00038 1087 Gene3D - 141 206 - -
Lsi01g00038 1087 CDD P-type_ATPase_Cu-like 303 1057 - -
Lsi01g00038 1087 SUPERFAMILY HMA, heavy metal-associated domain 140 210 IPR036163 GO:0046872
Lsi01g00038 1087 PRINTS P-type cation-transporting ATPase superfamily signature 886 897 - -
Lsi01g00038 1087 PRINTS P-type cation-transporting ATPase superfamily signature 520 534 - -
Lsi01g00038 1087 PRINTS P-type cation-transporting ATPase superfamily signature 680 694 - -
Lsi01g00038 1087 PRINTS P-type cation-transporting ATPase superfamily signature 908 918 - -
Lsi01g00038 1087 PRINTS P-type cation-transporting ATPase superfamily signature 961 980 - -
Lsi01g00038 1087 PRINTS P-type cation-transporting ATPase superfamily signature 984 996 - -
Lsi01g00038 1087 ProSiteProfiles Heavy-metal-associated domain profile. 58 124 IPR006121 GO:0046872
Lsi01g00038 1087 Gene3D - 685 802 IPR023299 GO:0000166
Lsi01g00038 1087 SFLD p-type atpase 662 1013 IPR044492 -
Lsi01g00038 1087 PRINTS H+-transporting ATPase (proton pump) signature 933 949 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00038 1087 PRINTS H+-transporting ATPase (proton pump) signature 992 1017 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00038 1087 PRINTS H+-transporting ATPase (proton pump) signature 961 977 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00038 1087 ProSitePatterns E1-E2 ATPases phosphorylation site. 682 688 IPR018303 -
Lsi01g00038 1087 ProSitePatterns Heavy-metal-associated domain. 63 93 IPR017969 GO:0046872
Lsi01g00038 1087 SUPERFAMILY HMA, heavy metal-associated domain 53 126 IPR036163 GO:0046872
Lsi01g00038 1087 SUPERFAMILY Calcium ATPase, transduction domain A 484 570 IPR008250 -
Lsi01g00038 1087 Pfam E1-E2 ATPase 483 658 - -
Lsi01g00038 1087 CDD HMA 60 123 IPR006121 GO:0046872
Lsi01g00038 1087 ProSiteProfiles Heavy-metal-associated domain profile. 140 206 IPR006121 GO:0046872
Lsi01g00038 1087 Pfam Heavy-metal-associated domain 61 121 IPR006121 GO:0046872
Lsi01g00038 1087 Pfam Heavy-metal-associated domain 143 203 IPR006121 GO:0046872
Lsi01g00038 1087 SFLD Haloacid Dehalogenase 662 1013 - -
Lsi01g00038 1087 PANTHER ATP7, ISOFORM B 24 788 - -
Lsi01g00038 1087 PANTHER ATP7, ISOFORM B 844 1080 - -
Lsi01g00038 1087 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 1048 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00038 Lsi-Chr1:431400 Lsi09g00270 Lsi-Chr9:2813136 2.79E-77 dispersed
Lsi01g00038 Lsi-Chr1:431400 Lsi11g00779 Lsi-Chr11:8958115 9.64E-19 transposed
Lsi01g00038 Lsi-Chr1:431400 Lsi06g01195 Lsi-Chr6:22295824 3.58E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00038 K17686 - thj:104806219 1411.36