Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00038 | ATGGCGCCGGGCCTCAGAGACCTCCAGCTCGCCCAGGTCGCCGCCGCAGACCGTCGCCCGCCGGCTATTTCTGCGGCTGATGAAATTCCAGACGATCTTGAGGATGTGCGTTTGCTCGATTCATATGAGAGGCAGGATGAGAATTTGGGCAAAATTGGGGATGGTATGAGGAGAGTTCAGGTCACAGTTTCTGGGATGACCTGCGCTGCTTGTTCTAATTCCGTGGAGGCTGCTCTGTGGGGCGTTAATGGCGTTTTGATGGCTTCTGTTGCATTGCTTCAGAACAGAGCTGACGTGGTTTTTGACCCCAACTTGGTTAAGGAGGAAGACATCAAGGAAGCAATAGAAGATGCTGGATTTGAGGCTGAGATAATACCTGAAACCACTTCAGTTGGAAAGAAGTCGCATGGAACACTGGTGGGTCAATTTACCATAGGTGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAAGGCATTTTAAAAGATCTTCCTGGTGTTAGAAGAGCGGTAGTTGCTTTGGCCACATCATTAGGAGAAGTTGAATATGATCCAACAACAACCAGTAAAGACGATATAGTTAACGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGTGAACAAGACAAAATTTTACTAGCGGTTGCAGGCATTGCTGGCGAGGTTGATCTACAGTTTTTGGAAGTCATACTTAGCAACTTGAAAGGGGTGAAACGGTTTCTCTTTGACAGTACATCAGGAAAACTTGAAATTATTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAATTTAAACTGCATGTTACGAGCCCTTACACAAGGTTAACATCTAAAGATGTTGAAGAGGCTAATAACATGTTTCGGCTTTTTATCTCCAGTCTGTCTCTCAGTGTACTCATCTTTCTCCAACGAGTAATATGTCCTCATATTCCTTTAATCTACTCATTGTTACTCTGGCGCTGTGGGCCCTTCCTCATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTTATCATTGGAAAGCGCTTTTATGTTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACTAACATGGATGTCTTGGTTGCTTTGGGTACCACGGCCTCTTACGTCTATTCTGTTTGTGCACTTCTCTATGGTGCAGTCACTGGATTTTGGTCTCCTACTTATTTTGAAACAAGTGCTATGTTGATAACCTTTGTATTATTGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCATTATTGCTTATCCGAGATAAAGTATCTCATGTGCGTCCTAACAAAATATTTGAGGATCAATTGACTGGTCCTTATTTTGTCTTTCTAGGTGGGAATTTGATAGAAGAAAGGGAAATCGATGCTCTGTTAATTCAACCTGGCGATGTGTTGAAGGTTCTTCCTGGTACAAAGATTCCAGCGGATGGTGTTGTTGTTTGGGGTTCAAGTTATATTAATGAGAGTATGGTTACCGGAGAATCTATACCTGTTTTGAAGGAGGTTAACTCACACGTCATTGGGGGTACAATTAATTTTCATGGAGCCCTTCACATTCAAGCAACAAGAGTAGGATCTGATGCAGTTCTGAACCAAATTATTAGTTTGGTTGAGACAGCTCAGATGTCCAAAGCCCCCATTCAGAAATTTGCTGACTTTGTAGCAAGCATATTCGTTCCAACCGTTGTTGCTATGGCATTGTGTACGTACGTTGGAGGAATTCTTGGGGCTTATCCTGCTGAATGGCTCCCAGAAAATGGAAATTACTTTGTATTTTCCCTCATGTTTGCAATAGCAGTGGTAGTTATTGCATGTCCCTGTGCACTAGGCTTGGCTACACCAACTGCTGTCATGGTTGCTACTGGTGTTGGTGCCAGCAATGGTGTCTTGATTAAAGGAGGAGATGCTTTGGAGAGGGCACAAAAGGTTAAGTACGTGATTTTTGATAAAACAGGCACACTAACCCAAGGGAAAGCAACCGTTACTACTGCCAAAGTATTCACTGAAATTTCTCGAGGAGATTTTCTTAAGTTGGTTGCTTCGGCAGAGGCTAGCAGTGAACACCCATTGGGAAAAGCTATAGTTGAGTATGCACGCCATTTCCATTTCTTCGATGAGCCTTCTGCGACCAAAAATGTGGAAAATCAAAGTAAAGAATCTTCTGGATGGCTTTTTGATGTCACAGATTTCTCTGCATTGCCAGGCCAAGGCATCCAGTGCATTATTGAGGGAAAAAGGATTCTGTTAAAGGAAATACGAGTGTTGATATTCTTCCACCCTGGAATATCAAATATGTATAGTTCTATTTCGTGGTTCTGCTTCTCAAAAACCTGTTGTCCTGAACAGGTTGGCGTTGATTTTCTTCCATCCTGGAATATATATTGTTCTATTTTGTGGTTCTGCTTCTCAAAAACGTGTTGTCCTGAACAGGTTGGCAACAGGAAGTTGATGAATGAAAGTGGAATCTCCATAGCACCTCACGTAGATAATTTCGTTATAGAGCTTGAAGAAAGTGCAAAGACAGGCATTCTTGTTGCATGTGATGACAACTTAATTGGAGTTGTGGGAATAGCAGATCCACTGAAGCGAGAAGCTGCAGTTGTTGTTGAGGGTCTTGTAAAAATGGGAGTTTCTCCAGTCATGGTTACAGGGGATAATTGGAGAACGGCTCGAGCTGTCGCCAAAGAGCTTGGTATACAAGATGTGAGGGCAGAAGTAATGCCAGCAGGAAAAGCTGAAGTCATTCAAAACTTCCAAAAGGATGGAAGCACAGTTGCAATGGTAGGTGACGGTATCAATGACTCGCCTGCTCTAGCTGCTTCTGATATCGGAATCGCAATCGGTGCGGGAACTGATATTGCCATTGAGGCAGCCGACTTCGTCCTGATGAGAAATAATTTAGAAGACGTAATAACAGCCATCGATCTCTCAAGGAAGACTTTCAATCGGATTCGATTGAATTACGTGTTTGCAATGGCCTACAATGTAATAGCAATTCCTATCGCTGCCGGAGTCTTCTTTCCTTCTTTGGGGGTTAAATTGCCTCCATGGGCAGCCGGTGCATGCATGGCTTTGTCGTCCGTAAGTGTCGTTTGCTCTTCTTTACTTCTTAGGAGATACAAAAGACCAAGACTTACAACAATACTCGAAATAACTGTAGAATAG | 3264 | 43.29 | MAPGLRDLQLAQVAAADRRPPAISAADEIPDDLEDVRLLDSYERQDENLGKIGDGMRRVQVTVSGMTCAACSNSVEAALWGVNGVLMASVALLQNRADVVFDPNLVKEEDIKEAIEDAGFEAEIIPETTSVGKKSHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDPTTTSKDDIVNAIEDAGFEASFVQSSEQDKILLAVAGIAGEVDLQFLEVILSNLKGVKRFLFDSTSGKLEIIFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYTRLTSKDVEEANNMFRLFISSLSLSVLIFLQRVICPHIPLIYSLLLWRCGPFLMDDWLKWALVTVVQFIIGKRFYVAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKVSHVRPNKIFEDQLTGPYFVFLGGNLIEEREIDALLIQPGDVLKVLPGTKIPADGVVVWGSSYINESMVTGESIPVLKEVNSHVIGGTINFHGALHIQATRVGSDAVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTYVGGILGAYPAEWLPENGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVFTEISRGDFLKLVASAEASSEHPLGKAIVEYARHFHFFDEPSATKNVENQSKESSGWLFDVTDFSALPGQGIQCIIEGKRILLKEIRVLIFFHPGISNMYSSISWFCFSKTCCPEQVGVDFLPSWNIYCSILWFCFSKTCCPEQVGNRKLMNESGISIAPHVDNFVIELEESAKTGILVACDDNLIGVVGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKAEVIQNFQKDGSTVAMVGDGINDSPALAASDIGIAIGAGTDIAIEAADFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPIAAGVFFPSLGVKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILEITVE | 1087 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 431400 | 438193 | + | Lsi01G000380.1 | Lsi01g00038 | 652696 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00038 | 1087 | ProSiteProfiles | Heavy-metal-associated domain profile. | 214 | 272 | IPR006121 | GO:0046872 | |
Lsi01g00038 | 1087 | PANTHER | HEAVY METAL P-TYPE ATPASE | 24 | 788 | - | - | |
Lsi01g00038 | 1087 | PANTHER | HEAVY METAL P-TYPE ATPASE | 844 | 1080 | - | - | |
Lsi01g00038 | 1087 | Gene3D | - | 56 | 128 | - | - | |
Lsi01g00038 | 1087 | Pfam | haloacid dehalogenase-like hydrolase | 676 | 975 | - | - | |
Lsi01g00038 | 1087 | CDD | HMA | 142 | 205 | IPR006121 | GO:0046872 | |
Lsi01g00038 | 1087 | Gene3D | - | 430 | 574 | - | - | |
Lsi01g00038 | 1087 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 376 | 786 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 | |
Lsi01g00038 | 1087 | Gene3D | - | 877 | 1029 | IPR023214 | - | |
Lsi01g00038 | 1087 | SUPERFAMILY | HAD-like | 679 | 1067 | IPR036412 | - | |
Lsi01g00038 | 1087 | ProSitePatterns | Heavy-metal-associated domain. | 145 | 174 | IPR017969 | GO:0046872 | |
Lsi01g00038 | 1087 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 484 | 709 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00038 | 1087 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 860 | 1042 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00038 | 1087 | TIGRFAM | TIGR00003: copper ion binding protein | 142 | 204 | IPR006122 | GO:0005507 | |
Lsi01g00038 | 1087 | TIGRFAM | TIGR00003: copper ion binding protein | 59 | 122 | IPR006122 | GO:0005507 | |
Lsi01g00038 | 1087 | Gene3D | - | 141 | 206 | - | - | |
Lsi01g00038 | 1087 | CDD | P-type_ATPase_Cu-like | 303 | 1057 | - | - | |
Lsi01g00038 | 1087 | SUPERFAMILY | HMA, heavy metal-associated domain | 140 | 210 | IPR036163 | GO:0046872 | |
Lsi01g00038 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 886 | 897 | - | - | |
Lsi01g00038 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 520 | 534 | - | - | |
Lsi01g00038 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 680 | 694 | - | - | |
Lsi01g00038 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 908 | 918 | - | - | |
Lsi01g00038 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 961 | 980 | - | - | |
Lsi01g00038 | 1087 | PRINTS | P-type cation-transporting ATPase superfamily signature | 984 | 996 | - | - | |
Lsi01g00038 | 1087 | ProSiteProfiles | Heavy-metal-associated domain profile. | 58 | 124 | IPR006121 | GO:0046872 | |
Lsi01g00038 | 1087 | Gene3D | - | 685 | 802 | IPR023299 | GO:0000166 | |
Lsi01g00038 | 1087 | SFLD | p-type atpase | 662 | 1013 | IPR044492 | - | |
Lsi01g00038 | 1087 | PRINTS | H+-transporting ATPase (proton pump) signature | 933 | 949 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00038 | 1087 | PRINTS | H+-transporting ATPase (proton pump) signature | 992 | 1017 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00038 | 1087 | PRINTS | H+-transporting ATPase (proton pump) signature | 961 | 977 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00038 | 1087 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 682 | 688 | IPR018303 | - | |
Lsi01g00038 | 1087 | ProSitePatterns | Heavy-metal-associated domain. | 63 | 93 | IPR017969 | GO:0046872 | |
Lsi01g00038 | 1087 | SUPERFAMILY | HMA, heavy metal-associated domain | 53 | 126 | IPR036163 | GO:0046872 | |
Lsi01g00038 | 1087 | SUPERFAMILY | Calcium ATPase, transduction domain A | 484 | 570 | IPR008250 | - | |
Lsi01g00038 | 1087 | Pfam | E1-E2 ATPase | 483 | 658 | - | - | |
Lsi01g00038 | 1087 | CDD | HMA | 60 | 123 | IPR006121 | GO:0046872 | |
Lsi01g00038 | 1087 | ProSiteProfiles | Heavy-metal-associated domain profile. | 140 | 206 | IPR006121 | GO:0046872 | |
Lsi01g00038 | 1087 | Pfam | Heavy-metal-associated domain | 61 | 121 | IPR006121 | GO:0046872 | |
Lsi01g00038 | 1087 | Pfam | Heavy-metal-associated domain | 143 | 203 | IPR006121 | GO:0046872 | |
Lsi01g00038 | 1087 | SFLD | Haloacid Dehalogenase | 662 | 1013 | - | - | |
Lsi01g00038 | 1087 | PANTHER | ATP7, ISOFORM B | 24 | 788 | - | - | |
Lsi01g00038 | 1087 | PANTHER | ATP7, ISOFORM B | 844 | 1080 | - | - | |
Lsi01g00038 | 1087 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 399 | 1048 | IPR023298 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00038 | Lsi-Chr1:431400 | Lsi09g00270 | Lsi-Chr9:2813136 | 2.79E-77 | dispersed | |
Lsi01g00038 | Lsi-Chr1:431400 | Lsi11g00779 | Lsi-Chr11:8958115 | 9.64E-19 | transposed | |
Lsi01g00038 | Lsi-Chr1:431400 | Lsi06g01195 | Lsi-Chr6:22295824 | 3.58E-27 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00038 | K17686 | - | thj:104806219 | 1411.36 |