Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00043 ATGGGGAAGAAGAAGAAGAGAGTTTCGTCTAAGGTATGGTGCTACTATTGCGACAGAGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCTAAACATTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCCGGCGGTATGGTCATCCACGTTCTCCAGGTCCACAAAGAGTCAGTCACCAAACTGCTCACCGCCGTAGCAATTAATTTGGTAGAGTTCACTTTTCTTCATTCCATAGATTTCCACATGCTGGATGTAGGATTCGAACTTGAAAAGATATTGGGATATTGTAGTAGAGTTCCTAATGCAAAACCAGGCAGAGAAGCAACAGATATTGAAATATATGGAATGCAAGGAATTCCTCCGGATGTCTTGGCAGCACACTATGGAGAGGAGGAGGAAGAGTCCTTGTTGAAGGTGGCCAAAGTGGAGATGCCATCAAGTCAGATTGTTGGAGGAGTGGTGCCTGGATCTCTGGGTATTGTATACCCTCCTCGGCCAAGTTTAGCTGCAATGCAACCTATTTATCCTTCAACTGGACAAGCGCAGCCTACTGCCTGGACAGTTCCACCTCGTCCCCAACCTTGGTTCCCCCCAAATTCAGCCGTTTCAATTCCTCCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCAAGGCCCCCACTACCAGTATCATCAACTCCTATGCTCCAGCCTTTACAAATAACGCCTCCTGGATTGACTTCAACTACACCTTCAGTTTCTGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGACCTACCCAAAGCTCTCCTTTTTCTTCATCTACACTTTCAACAAGCATTCCTTTGACCTCGGCAGCAGATATCAAGGGTTCAGTGACACATCTGGGCACCAACTCCTTTTCTACAATTGGAAATCAAGTTTCAAACATTCCAGGAGACGTAACTGCATTTAATGCTGTAGGTGGAATATTAAGCAATTCACACTCCTATGCCTCGGGACCAAATACAGGTGGTCCTTCTATCGGACCACCTCCTGTAATTGCGAATAAAGCTCCTACTCAACCATCAACGAATGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGAACCTTGAGCCTGAACTCACTTTTTACCTCGAACATCATCATCAAATTTTGCACGCCATACCACCAATCTTGTGGGCATCAAAAGGCTCAAGTAGGTATTTATGTTATCCCACTTACAGTGTGTATATAAAAACTTTCCAACTCTTGCTGCAAGAAGGTTCTATTGCAACAATATGGTTAAGAACGTATGAATACGACTTTGACCAGATGAGTTCAATTGATGCAGCCATAGACAAACGAATCTTGGAAAGCAGGCTTGCTGGCCGAATGCCATTTTAG 1470 44.76 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKLLTAVAINLVEFTFLHSIDFHMLDVGFELEKILGYCSRVPNAKPGREATDIEIYGMQGIPPDVLAAHYGEEEEESLLKVAKVEMPSSQIVGGVVPGSLGIVYPPRPSLAAMQPIYPSTGQAQPTAWTVPPRPQPWFPPNSAVSIPPPAPLGYAQQPLFPVQTARPPLPVSSTPMLQPLQITPPGLTSTTPSVSVSQPLFPVVSNSHGPTQSSPFSSSTLSTSIPLTSAADIKGSVTHLGTNSFSTIGNQVSNIPGDVTAFNAVGGILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQNLEPELTFYLEHHHQILHAIPPILWASKGSSRYLCYPTYSVYIKTFQLLLQEGSIATIWLRTYEYDFDQMSSIDAAIDKRILESRLAGRMPF 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 469731 475257 + Lsi01G000430.1 Lsi01g00043 652701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00043 489 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Lsi01g00043 489 Gene3D Classic Zinc Finger 2 65 - -
Lsi01g00043 489 PANTHER ZINC FINGER PROTEIN 207 1 66 - -
Lsi01g00043 489 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Lsi01g00043 489 PANTHER ZINC FINGER PROTEIN 207 102 489 - -
Lsi01g00043 489 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 66 - -
Lsi01g00043 489 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 102 489 - -
Lsi01g00043 489 SMART c2h2final6 12 35 IPR013087 -
Lsi01g00043 489 SMART c2h2final6 36 59 IPR013087 -
Lsi01g00043 489 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24544 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00043 - - cmo:103484275 641.343