Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00049 ATGGATTCAGCAAGGAGTTGGTTTCAGAAGTTCCAAAATAGAGTAAAGAAGGAAACTGCAAGTGACAATGAGGTTCAAGATGTACCCTCAAGTGCGACGAAGCAGAAAGTTGAGGTTGCCAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGGTATTTTTTTTTAAGCCTGGAATTTAAACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCCGACGTTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACAGAATATATGCGCCTTCGTAGACATAAAATGGGCGTTGATGACTTTGAACTTTTGACAATTATAGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTGAAGAAATCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTCAAAGCTGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGATGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACCCTGTTAATGCGCAAGGATATTTTGACGGAGGATGAGGCTAGATTTTATGTTGGGGAAACAGTCCTTGCCATAGAGTCCATCCACAAGCATAATTACATTCACAGAGACATCAAGCCTGACAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACTGAGGAAGAAAAAGTAATGGGGAAGAATGTCAGATCTTCCACCGAAAATGATAGTCAAATTAGTGCATCGAAACGGACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGGACACTGGCTTATTCAGCTGTTGGAACGCCAGACTATATTGCCCCAGAAGTGTTATTGAGGAAAGGATATGGAATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTCCCACCTTTCTATTCTGACGATCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACTCATTTGAGATTCCCAACAGAAGCAAAACTTTCCATTGAGGCCAAAGATCTTATTTGCAAACTTCTATGCAATGTTGAGCAAAGGATTGGAACCAAAGGAGCTAAAGAAATTAAGGCACATCCATGGTTTAAAGGTACACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATCCCAGAGATTCAGGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGGTAAATATTATCATTTTTTTGTCGTACAGTTGCCATTTATTATTTGCTTTGCTATCTTTCCAAATGTTATTCCTTCATTCTTTAGGAGAGGTTGCCTTCGTTTTGACTTTTTTCCCATATGAAGGCTACTCATCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGCCCCTTGAGAAAGCTGATGTGATTAGAACTTTGAATATCCATATTCCTTTAATAGCAACAAGAAAAATACTTGTGCTAATAGTAGAAGCTTTTGTTGTTCAGCAGAAGCTTTCACCCAAGGATGTGAACTTTGTTGGTTATACGTACAAGAACTTTGAAATTGTCAACGAACACCACTTGTCTGGCATTACTGAGATGAGGAAAAAGCCTATCAAGACCAAGAGACCATCTGTTACGACTCTATTTGGTACATTCACCCCACAGCAGATTCTTCGGAGCAGCCTGTTCAAAGAAGTTTTCCTAATCATTTGCCAACCCATCTCGAAGTCTCAGAAAGCCCCGACCCTTCACCTCGTTCAACCGGATCATTGCAACAGCCGAAACGGTGGGGAAGATGAAAGGTCAAGCCATAACTTGCTCTTTAGCTTACCCTCAAATGATCCAGAGATTCTGCAATCTTTATTCACAATGACAGATTTCTCCCCGGCTAGTAGCCTTCTTGTGACGGAAAAAGGTTTTCAAATGTTGTTAGATGGCCATGAGTCTAAAGCTTCTCACAGCCAGAATCCAGCAGAAGTTAAGTTGATTCAGCTCAAAAATCTGCATTTTCCTCAATCACAGATGTGCTCGAGAGGAGAGATTCAAGTGTCATGTATTCCCAAGTTG 2184 40.66 MDSARSWFQKFQNRVKKETASDNEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERYFFLSLEFKRWVLERRLADADVSEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDDDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEEEKVMGKNVRSSTENDSQISASKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIQDELDTRNFEKYEEVNIIIFLSYSCHLLFALLSFQMLFLHSLGEVAFVLTFFPYEGYSSGCARSNSIKVGPLEKADVIRTLNIHIPLIATRKILVLIVEAFVVQQKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPIKTKRPSVTTLFGTFTPQQILRSSLFKEVFLIICQPISKSQKAPTLHLVQPDHCNSRNGGEDERSSHNLLFSLPSNDPEILQSLFTMTDFSPASSLLVTEKGFQMLLDGHESKASHSQNPAEVKLIQLKNLHFPQSQMCSRGEIQVSCIPKL 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 586970 594291 + Lsi01G000490.1 Lsi01g00049 652707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00049 728 Gene3D Transferase(Phosphotransferase) domain 1 312 435 - -
Lsi01g00049 728 Gene3D Transferase(Phosphotransferase) domain 1 199 267 - -
Lsi01g00049 728 PANTHER SERINE/THREONINE-PROTEIN KINASE 543 594 - -
Lsi01g00049 728 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 565 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi01g00049 728 ProSiteProfiles Protein kinase domain profile. 115 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00049 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Lsi01g00049 728 Pfam Protein kinase domain 116 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00049 728 Gene3D Phosphorylase Kinase; domain 1 436 446 - -
Lsi01g00049 728 Gene3D Phosphorylase Kinase; domain 1 113 198 - -
Lsi01g00049 728 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Lsi01g00049 728 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 13 451 - -
Lsi01g00049 728 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 451 - -
Lsi01g00049 728 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 543 594 - -
Lsi01g00049 728 CDD STKc_NDR_like 113 451 - -
Lsi01g00049 728 SUPERFAMILY Protein kinase-like (PK-like) 96 465 IPR011009 -
Lsi01g00049 728 MobiDBLite consensus disorder prediction 274 296 - -
Lsi01g00049 728 SMART serkin_6 115 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00049 Lsi-Chr1:586970 Lsi09g01229 Lsi-Chr9:19708524 8.69E-06 dispersed
Lsi01g00049 Lsi-Chr1:586970 Lsi04g01409 Lsi-Chr4:21848408 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83227 PF00069 Pkinase 4.70E-64 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00049 K08790 - csv:101208438 865.529