Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00053 ATGGTCGGAGGCTTTGAAGTGGGAGCTGTTCCCTACAACCCGGACGGTTGGGGTCCGCCGGACTCTACCGCCACTCTCGTCGCTTCCTCTAACCTCCCTCTCAATGTCCCCTTTGCCCCATTCTCTCGCTCCGATAAGCTTGGCCGGATCGCCGATTGGACCCGAACCATGAATAACCCTGGCCGACCAAAGACTGCTTCCGATTCCGTCTTCGATTTCACGAATGACGATTCCTTCCCGGCCAATGCCGACGAGGACATGTCCTTCCGTTTGGTTGATGGAAAGCCTCCTCCGCGCCCCAAATTTGGCCCTAAATGGCGATTCAACCAACAAAGAACGCAGCTACCTCAGCGCCGCGACGAAGAAGTTGAAGCTCGAAAGCGCGAGGCTGAGAAGGAGCGGGCTCGCCGTGACCGCCTTTACAACCTCAACAGGTCTAATGTCAATGCTCCCCGTCGTGAAGCTGCTGTTTTCAAATCCTCTGTGGAAATTCAACCCGAATGGAACATGCTTGATCAGATTCCCTTCTCCACTTTCTCGAAGCTGTCCTTCTCTGTTCCTGAGCCCGAAGACCTTCTTCTGTGCGGCGGGCTAGAGTTCTATGATCGAGCATACGACCGAATCACTCCCAAGAACGAACGCCGCCTCGAGCGCTTTAAGAACCGCAACTTCTTCAAGGTAACTACTACTGATGATCCTGTCATTCGTCGTTTAGCAAATGAGGACAAAGCCACAGTTTTCGCCACCGATGCCATCCTTTCTACCCTTATGTGTGCAACTAGATCGGTTTACTCCTGGGATATTGTGGTTCAACGTGTTGGGAACAAGCTTTTCTTCGACAAGAGGGATGGGTCGCAACTTGATTTACTTGCCGTCCACGAGACCTCTCAGGAACCCTTACCAGAGGCGAAGGACGATATCAATTCCGCTTACTCACTCAGTGTTGAAGCTGCTTACATTAATCAGAACTTCTCTCAGCAAGTTTTAGTTAGGGACGGAAATAAGGTGGCCTTTGACGAGCCAAACCCATTTGCAAATGAGGGTGAGGAGGTTGCTTCTGTTGCTTATAGGTATAGGAGGTGGAAACTTGATGATGACATGTATCTTGTAGCGAGGTGTGAGGTTCAAAGTGTTATGGAGGTTAATAAGCAAAGATCATTCTTGACTTTGAATGCTCTCAATGAATTTGATCCCAAGTATTCTGGTGTTGATTGGAGGCAGAAATTGGAGACACAGAGGGGTGCTGTTTTGGCCACTGAGTTGAAGAACAATGCTAATAAATTGGCAAAATGGACAGCTCAAGCCCTGTTGGCTAGCGCAGATATGATGAAGTTGGGATATGTCTCTAGGGTTCATCCTCGCGATCACTTTAACCATGTCATCTTAGCTGTGGTTGGATACAAACCTAAGGATTTTGCAGGTCAAATTAACTTGAATACGTCTAACATGTGGGGTATTGTAAAATCTATCGTGGATTTGTGTATGAAATTGAATGAAGGTAAGTATGTTTTGGTCAAGGACCCATCGAAACCACAGGTTAGGATCTATGAGGTTCCGGCAGATGCATTTGAGAATGATTATGTTGAGGAGCCACTGGCTGAGGAGGATCAAGTGCAACCACCCGCAGAAGATGAAAATGGTGTCACTGCTAATGCGGGGGCGGATGATGCGGAAGAGAAGGTTGATGCTGCTCAAGCTTAA 1701 48.5 MVGGFEVGAVPYNPDGWGPPDSTATLVASSNLPLNVPFAPFSRSDKLGRIADWTRTMNNPGRPKTASDSVFDFTNDDSFPANADEDMSFRLVDGKPPPRPKFGPKWRFNQQRTQLPQRRDEEVEARKREAEKERARRDRLYNLNRSNVNAPRREAAVFKSSVEIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLLCGGLEFYDRAYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDAILSTLMCATRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGNKVAFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVMEVNKQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKDFAGQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLAEEDQVQPPAEDENGVTANAGADDAEEKVDAAQA 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 627737 629437 - Lsi01G000530.1 Lsi01g00053 652711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00053 566 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 3 529 IPR007783 GO:0003743|GO:0005737|GO:0005852
Lsi01g00053 566 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 559 IPR007783 GO:0003743|GO:0005737|GO:0005852
Lsi01g00053 566 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 6 517 IPR007783 GO:0003743|GO:0005737|GO:0005852
Lsi01g00053 566 Coils Coil 118 138 - -
Lsi01g00053 566 MobiDBLite consensus disorder prediction 530 566 - -
Lsi01g00053 566 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D 4 559 - -
Lsi01g00053 566 MobiDBLite consensus disorder prediction 114 134 - -
Lsi01g00053 566 PIRSF Transl_init_eIF3d 1 547 IPR007783 GO:0003743|GO:0005737|GO:0005852
Lsi01g00053 566 MobiDBLite consensus disorder prediction 88 134 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00053 K03251 - csv:101208923 1104.35