Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi01g00073 | ATGAAGCGAAGTTTTAAATTTGTGGAAGAAATTGTATCTGTGGGGTTCCCTACAACAATTGCAAGTCCTTCCCAACAGGAAATATTATTAAATGAGTTGAAGTTAATATCATTGAACATTTTCCAAATTCACATTTTCCTTGGATATTGGATTTGTCTTATACATGCCATGTTCTTACACTATGGATTTATGCTGTTCAATGCCAATGTTTTTGGATTGAGGACATTGCAGGAAGAAGATCACAGCACGAACGACGACAACGACGACGAACGAGAGGATGATTTGGAAGATGAGGGAGGCTCGACACAAATTAAACAACGACAAGTTATTTATGGATCTTATCTAGTACAAGGCAAAATGAATCATGGAATGGAGGACTATATCGTTACTGAAGAACGACATGTGGACGACCATGAGCTTGGACTATTTGCAATATTTGATGGCCACTCGGGTCGCGATGTTGCAGAATACTTGCAGAGTCATCTGTTTGATAACATCTTAAGCCAGTGTGATTTCTGGGAAGACCCTGAAGGAGCAATCAGGACAGCATATAAAGCAACAGATGAGGAGATTTTAGCTAAAAAAGTGGGAAAGAGAGGAGGTTCAACAGCAGTCACAGCTATACTGATCGATGGACAGAAGCTAATTGTCGCACATGTAGGTGACTCACGGGCGGTGATATGCAGGAATGGCTCAGCAAAACCAATTACGGTCGATCACGAACCAGAGAAGGAGAAGGAGTTTGTTGAGAGCCGAGGCGGATTTGTTGTGCAAATGCCAGGTCCTTTGACAACAAATGAATCTGAAAATAAACTTGAAGTGTGCCACGGGATACTCACAATTGACAATGAGACTGAGTTCATCATTTTGGCCAGTGATGGCCTCTGGAAGGTAATGTCAAAACAGGAGGCTTGTGATTGCATCAGAGAAATGGCAATGGATGCTCAAAAGGCTTCAGAGGAATTGATTAAAGAGGCATTGTCTAAGATGAGCTACGATGACATTTCCTGCATTGTTGTTACCTTCCACTGA | 1032 | 41.67 | MKRSFKFVEEIVSVGFPTTIASPSQQEILLNELKLISLNIFQIHIFLGYWICLIHAMFLHYGFMLFNANVFGLRTLQEEDHSTNDDNDDEREDDLEDEGGSTQIKQRQVIYGSYLVQGKMNHGMEDYIVTEERHVDDHELGLFAIFDGHSGRDVAEYLQSHLFDNILSQCDFWEDPEGAIRTAYKATDEEILAKKVGKRGGSTAVTAILIDGQKLIVAHVGDSRAVICRNGSAKPITVDHEPEKEKEFVESRGGFVVQMPGPLTTNESENKLEVCHGILTIDNETEFIILASDGLWKVMSKQEACDCIREMAMDAQKASEELIKEALSKMSYDDISCIVVTFH | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 737296 | 739120 | + | Lsi01G000730.1 | Lsi01g00073 | 652731 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi01g00073 | 343 | SMART | PP2C_SIG_2 | 125 | 342 | IPR001932 | - | |
| Lsi01g00073 | 343 | PANTHER | PROTEIN PHOSPHATASE 2C 28-RELATED | 97 | 343 | - | - | |
| Lsi01g00073 | 343 | MobiDBLite | consensus disorder prediction | 82 | 97 | - | - | |
| Lsi01g00073 | 343 | MobiDBLite | consensus disorder prediction | 80 | 102 | - | - | |
| Lsi01g00073 | 343 | PANTHER | ALPHABET, ISOFORM E-RELATED | 97 | 343 | - | - | |
| Lsi01g00073 | 343 | Gene3D | - | 91 | 343 | IPR036457 | - | |
| Lsi01g00073 | 343 | ProSiteProfiles | PPM-type phosphatase domain profile. | 110 | 342 | IPR001932 | - | |
| Lsi01g00073 | 343 | SMART | PP2C_4 | 106 | 340 | IPR001932 | - | |
| Lsi01g00073 | 343 | Pfam | Protein phosphatase 2C | 279 | 334 | IPR001932 | - | |
| Lsi01g00073 | 343 | Pfam | Protein phosphatase 2C | 121 | 257 | IPR001932 | - | |
| Lsi01g00073 | 343 | SUPERFAMILY | PP2C-like | 106 | 343 | IPR036457 | - | |
| Lsi01g00073 | 343 | CDD | PP2Cc | 109 | 342 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00073 | Lsi-Chr1:737296 | Lsi11g01704 | Lsi-Chr11:25194324 | 1.23E-90 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi01g00073 | - | - | csv:101211141 | 407.142 |