Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00073 ATGAAGCGAAGTTTTAAATTTGTGGAAGAAATTGTATCTGTGGGGTTCCCTACAACAATTGCAAGTCCTTCCCAACAGGAAATATTATTAAATGAGTTGAAGTTAATATCATTGAACATTTTCCAAATTCACATTTTCCTTGGATATTGGATTTGTCTTATACATGCCATGTTCTTACACTATGGATTTATGCTGTTCAATGCCAATGTTTTTGGATTGAGGACATTGCAGGAAGAAGATCACAGCACGAACGACGACAACGACGACGAACGAGAGGATGATTTGGAAGATGAGGGAGGCTCGACACAAATTAAACAACGACAAGTTATTTATGGATCTTATCTAGTACAAGGCAAAATGAATCATGGAATGGAGGACTATATCGTTACTGAAGAACGACATGTGGACGACCATGAGCTTGGACTATTTGCAATATTTGATGGCCACTCGGGTCGCGATGTTGCAGAATACTTGCAGAGTCATCTGTTTGATAACATCTTAAGCCAGTGTGATTTCTGGGAAGACCCTGAAGGAGCAATCAGGACAGCATATAAAGCAACAGATGAGGAGATTTTAGCTAAAAAAGTGGGAAAGAGAGGAGGTTCAACAGCAGTCACAGCTATACTGATCGATGGACAGAAGCTAATTGTCGCACATGTAGGTGACTCACGGGCGGTGATATGCAGGAATGGCTCAGCAAAACCAATTACGGTCGATCACGAACCAGAGAAGGAGAAGGAGTTTGTTGAGAGCCGAGGCGGATTTGTTGTGCAAATGCCAGGTCCTTTGACAACAAATGAATCTGAAAATAAACTTGAAGTGTGCCACGGGATACTCACAATTGACAATGAGACTGAGTTCATCATTTTGGCCAGTGATGGCCTCTGGAAGGTAATGTCAAAACAGGAGGCTTGTGATTGCATCAGAGAAATGGCAATGGATGCTCAAAAGGCTTCAGAGGAATTGATTAAAGAGGCATTGTCTAAGATGAGCTACGATGACATTTCCTGCATTGTTGTTACCTTCCACTGA 1032 41.67 MKRSFKFVEEIVSVGFPTTIASPSQQEILLNELKLISLNIFQIHIFLGYWICLIHAMFLHYGFMLFNANVFGLRTLQEEDHSTNDDNDDEREDDLEDEGGSTQIKQRQVIYGSYLVQGKMNHGMEDYIVTEERHVDDHELGLFAIFDGHSGRDVAEYLQSHLFDNILSQCDFWEDPEGAIRTAYKATDEEILAKKVGKRGGSTAVTAILIDGQKLIVAHVGDSRAVICRNGSAKPITVDHEPEKEKEFVESRGGFVVQMPGPLTTNESENKLEVCHGILTIDNETEFIILASDGLWKVMSKQEACDCIREMAMDAQKASEELIKEALSKMSYDDISCIVVTFH 343
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 737296 739120 + Lsi01G000730.1 Lsi01g00073 652731
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00073 343 SMART PP2C_SIG_2 125 342 IPR001932 -
Lsi01g00073 343 PANTHER PROTEIN PHOSPHATASE 2C 28-RELATED 97 343 - -
Lsi01g00073 343 MobiDBLite consensus disorder prediction 82 97 - -
Lsi01g00073 343 MobiDBLite consensus disorder prediction 80 102 - -
Lsi01g00073 343 PANTHER ALPHABET, ISOFORM E-RELATED 97 343 - -
Lsi01g00073 343 Gene3D - 91 343 IPR036457 -
Lsi01g00073 343 ProSiteProfiles PPM-type phosphatase domain profile. 110 342 IPR001932 -
Lsi01g00073 343 SMART PP2C_4 106 340 IPR001932 -
Lsi01g00073 343 Pfam Protein phosphatase 2C 279 334 IPR001932 -
Lsi01g00073 343 Pfam Protein phosphatase 2C 121 257 IPR001932 -
Lsi01g00073 343 SUPERFAMILY PP2C-like 106 343 IPR036457 -
Lsi01g00073 343 CDD PP2Cc 109 342 IPR001932 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00073 Lsi-Chr1:737296 Lsi11g01704 Lsi-Chr11:25194324 1.23E-90 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00073 - - csv:101211141 407.142