Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00074 ATGGGGAAGTTTCAAATCCGGAAATTCTTGATTCCATTACTACTTCTGATAATTTCTGAGTATCTACAAGCTGGAGATGCCAAATCCAATTCTCTTTTCATCAACTGCGGTTCAAGTTCAAATGAAACTGCTGATGGGAGGAAATGGATTGGCGACCTGACTTCCGAAGGGAATTTTTCTGTGGGCAATCTTGGAGCTAATATCAATGCTTCCACAGCCACTTTAAACGGCGATTCAATCTTTGAGCCGCTGTATAAAACTGCTCGGATATTTACTAATTCCCTGAATTATACTTTTAAAGGAGCTTGGGGCAATCATGTTGTTCGGCTTCATTTCTGCCCCTTTCCTTTTGAGAATCTCAATGTGAACGAGTCATCATTTTCTGTCTCAGCAAATGGTCTTGGATTAGTTTCAGAGTTCAGCGTTCCCAATGAGATTGCATATAAGAACATGGAGTTTCAGCGTTCTGGGGTCAATTCAAGTTCATTCTCTTTGATTAAAGAGTTCATTATTTCTGTCAATTCAGAAGCATTTGTTCTTGAGTTCTCCCCTTCTGGGGGATCATTTGGTTTCATTAATGCTATTGAAATTGTTCCCCTGGTGGATGAGCTTTTTGGAGGTTCCATTGATAAGGTGGGTGGAAGTGCTGTTAGTTTGAATGTGAGTGAAAGGGGAACTGAAACTATGTACAGATTGAATGTTGGAGGGTCGGTGATCAAGCCCACTCAAGATTCAGATCTTTGGAGAATGTGGGAAGTGGACTCGAGTTATATGATTACAGCAAATGCTGGCTCTGAGATACATAACAGTTCTAATGTAACATATGCTTCCATGAATGACTCCATTGTAGCTCCTCTCCCTGTATATGAAACAGCCAGAACGATGTCTGAGACTGAAGTGCTCGAGAAAAGGTTCAACATGTCGTGGAAATTCGAAGTTCATCCCGGTTTCGAGTATTTGATTAGATTGCATTTCTGTGAGCTGCTGTATGAGAAGGCAAGAGAGAGGGTTTTCAAGATTTACATAAACAACAGGACTGCAGTTGAGAATTTTGATGTGTTTGTACGAGCGGGGGGAATTAACAGAGCATATCATGTGGATTTCCTTGAACCAATATCGTCCAAAATCAACACCCTTTGGATTCAATTAGGCCCTGATACGGCTGCAGGCGCGGCTGGAACAGATGCTCTCTTGAATGGTCTGGAAATCTTTAAGCTGAGTCAAAATGGGAATCTCGCGTACATTGACAGGTTTAATGCCTTGGAGGAATCAACGGGAAACTCAAAATCTCAAATTCTCTGGATAGGCATTGGAGCAGGTTTAGCATCTGTTGTTTTCCTTGCTATTGTTACCACTCTCATAATCTATTTCTGCAGAATCCGGAGAAGGAATTTCACTAAGAAGAACTCTTCTAGGTGGAGAGCAGGATCCAGTCATGGAGCCACTGTCACCAACACTTATGCCAGAGGGTCCTTGGGGGGAGGCCAGAGTGTATTTGGAACCTTGCCATCTGTCCGAGTTGGCAAATGGTTTACATTAGCAGAGATTCTTGCAGCGACAGATAACTTTGATGAAGCTCTGATGATTGGAGTTGGCGGTTTTGGTAAGGTCTACAGAGGGGAGATTGATGATGGTACTCTTGTGGCAATCAAGAGAGCAAACCCACAGTCTCAGCAGGGACTTGCCGAGTTTGAGACCGAAATCGAAATGCTTTCTAAACTTAGGCATAGGCATCTGGTCTCCATGATCGGCTTTTGCGACGAGCAAAAGGAAATGATCTTGGTTTACGAATATATGGCAAATGGCACTCTTAGAAGCCATCTCTTTGGGAGTAATCTCCCACCTTTGACATGGAAGCAGCGATTGGAAGTGTGCATTGGTGCAGCCAGGGGACTCCATTACCTTCACACAGGAGCTGAGAGAGGAATAATCCACAGAGATGTGAAGACGACCAACATACTCTTGGATGAAAACTTTGTTGCAAAAATGTCTGATTTTGGTCTTTCAAAAACAGGTCCTGCTTTGGATCATACCCATGTTAGTACTGCAGTTAAGGGCAGCTTTGGCTACCTCGATCCGGAGTATTTCAGGCGCCAGCAGCTGAGTGAAAAATCTGATGTCTATTCTTTTGGTGTGGTATTGTTAGAAGTTGTTTGTGCACGAGCTGTTATAAACCCAAGTTTGCCTAAGGATCAGATAAATCTTGCAGAATGGGCAATGAAATGGCAACGCAAAAAGTTGCTGCACACCATCATAGACCCACATCTCAAAGACAAATATTGTCCCGAGTCTCTGAAAACATTTGGAGAGATAGCAGAAAAATGCCTTGCTGATGAAGGGAAGATTCGTCCAACAATGGGGGAAGTTCTATGGCACCTAGAATATTCTCTGCAACTCCATGATGCTTGGATCCGCACTAATGATGCACAAAGTTCTTGCACAATAAACTTAGAAGGATCACAAGCTGAGGAACAGAGGCTAGATCTTGATGGGGATGAGGAAAAATCCAACACGAACGCTTCAACTCCAACTGATCACTTATCCTAA 2547 42.99 MGKFQIRKFLIPLLLLIISEYLQAGDAKSNSLFINCGSSSNETADGRKWIGDLTSEGNFSVGNLGANINASTATLNGDSIFEPLYKTARIFTNSLNYTFKGAWGNHVVRLHFCPFPFENLNVNESSFSVSANGLGLVSEFSVPNEIAYKNMEFQRSGVNSSSFSLIKEFIISVNSEAFVLEFSPSGGSFGFINAIEIVPLVDELFGGSIDKVGGSAVSLNVSERGTETMYRLNVGGSVIKPTQDSDLWRMWEVDSSYMITANAGSEIHNSSNVTYASMNDSIVAPLPVYETARTMSETEVLEKRFNMSWKFEVHPGFEYLIRLHFCELLYEKARERVFKIYINNRTAVENFDVFVRAGGINRAYHVDFLEPISSKINTLWIQLGPDTAAGAAGTDALLNGLEIFKLSQNGNLAYIDRFNALEESTGNSKSQILWIGIGAGLASVVFLAIVTTLIIYFCRIRRRNFTKKNSSRWRAGSSHGATVTNTYARGSLGGGQSVFGTLPSVRVGKWFTLAEILAATDNFDEALMIGVGGFGKVYRGEIDDGTLVAIKRANPQSQQGLAEFETEIEMLSKLRHRHLVSMIGFCDEQKEMILVYEYMANGTLRSHLFGSNLPPLTWKQRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPSLPKDQINLAEWAMKWQRKKLLHTIIDPHLKDKYCPESLKTFGEIAEKCLADEGKIRPTMGEVLWHLEYSLQLHDAWIRTNDAQSSCTINLEGSQAEEQRLDLDGDEEKSNTNASTPTDHLS 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 739636 742182 - Lsi01G000740.1 Lsi01g00074 652732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00074 848 PANTHER OSJNBA0058K23.13 PROTEIN 21 824 - -
Lsi01g00074 848 Gene3D - 224 408 - -
Lsi01g00074 848 Gene3D - 27 200 - -
Lsi01g00074 848 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Lsi01g00074 848 Gene3D Transferase(Phosphotransferase) domain 1 599 816 - -
Lsi01g00074 848 Gene3D Phosphorylase Kinase; domain 1 502 598 - -
Lsi01g00074 848 CDD STKc_IRAK 529 794 - -
Lsi01g00074 848 PANTHER OS07G0166700 PROTEIN 21 824 IPR045272 GO:0004714|GO:0006468
Lsi01g00074 848 SMART serkin_6 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00074 848 ProSiteProfiles Protein kinase domain profile. 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00074 848 Pfam Malectin-like domain 34 405 IPR024788 -
Lsi01g00074 848 SUPERFAMILY Protein kinase-like (PK-like) 502 795 IPR011009 -
Lsi01g00074 848 Pfam Protein tyrosine and serine/threonine kinase 528 790 IPR001245 GO:0004672|GO:0006468
Lsi01g00074 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Lsi01g00074 848 MobiDBLite consensus disorder prediction 822 848 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00074 Lsi-Chr1:739636 Lsi04g01289 Lsi-Chr4:20305282 0 dispersed
Lsi06g01014 Lsi-Chr6:20279718 Lsi01g00074 Lsi-Chr1:739636 1.83E-67 dispersed
Lsi09g00834 Lsi-Chr9:9576550 Lsi01g00074 Lsi-Chr1:739636 6.56E-60 dispersed
Lsi01g00074 Lsi-Chr1:739636 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83228 PF12819 Malectin_like 2.00E-31 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00074 - - bhj:120073088 1632.08