Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00082 ATGATTGCATCTGAGGTTTTTGAAAACCTCTTCCAATTTCATTTTTCTTGGTCTGAGTCGTTTTTGGCACGCAAAAGAAGATTAAGGGACCTATTGCTTCTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTCGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGATGCGATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTATTCCTGAAGGATATTCAAAACCTGGACCAGATGCCACACATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAATTTCAAGAATTTCTGAAACCGAGCTTGAGAATCTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAGCTTTTCTGCAAAGGTCATGAACAGTTTTCGTTCAAATTCTTCACAAAAACCTGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGATATGATGTCGAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAAGGTTTTGGAACCATAAAATTGCAAGTATACGATTACGACACATTTTCAGCAGACGACATAATGGGAGAAGCAGAGATTGATCTCCAGCCCTTGATAACATCTGCAATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCGCACGATAACGCTCTCATAAGCGATAGCATCGTTAATATCGTCGATGGGAAGGTGAAGCAAGAGATAGCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGATGGCTCTTGAACAATAG 990 39.9 MIASEVFENLFQFHFSWSESFLARKRRLRDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYEFQEFLKPSLRILSSNSDKSNIQASFSAKVMNSFRSNSSQKPVKVIKGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGTIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALISDSIVNIVDGKVKQEIALKLQNVESGELDLELEWMALEQ 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 798897 803353 - Lsi01G000820.1 Lsi01g00082 652740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00082 329 CDD ArfGap 37 134 - -
Lsi01g00082 329 ProSiteProfiles ARF GTPase-activating proteins domain profile. 25 153 IPR001164 GO:0005096
Lsi01g00082 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 22 329 - -
Lsi01g00082 329 PRINTS HIV Rev interacting protein signature 37 56 IPR001164 GO:0005096
Lsi01g00082 329 PRINTS HIV Rev interacting protein signature 56 73 IPR001164 GO:0005096
Lsi01g00082 329 PRINTS HIV Rev interacting protein signature 77 98 IPR001164 GO:0005096
Lsi01g00082 329 Pfam C2 domain 177 263 IPR000008 -
Lsi01g00082 329 ProSiteProfiles C2 domain profile. 152 270 IPR000008 -
Lsi01g00082 329 CDD C2_ArfGAP 177 316 - -
Lsi01g00082 329 Gene3D Arf GTPase activating protein 16 145 IPR038508 -
Lsi01g00082 329 Pfam Putative GTPase activating protein for Arf 26 141 IPR001164 GO:0005096
Lsi01g00082 329 SUPERFAMILY ArfGap/RecO-like zinc finger 25 142 IPR037278 -
Lsi01g00082 329 SMART C2_3c 174 269 IPR000008 -
Lsi01g00082 329 Gene3D C2 domain 176 329 IPR035892 -
Lsi01g00082 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 22 329 IPR044518 GO:0005096|GO:0005543
Lsi01g00082 329 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 317 IPR035892 -
Lsi01g00082 329 SMART arf_gap_3 25 147 IPR001164 GO:0005096
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00082 Lsi02g00943 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00082 Lsi-Chr1:798897 Lsi09g00817 Lsi-Chr9:9387587 2.37E-105 dispersed
Lsi04g01282 Lsi-Chr4:20241871 Lsi01g00082 Lsi-Chr1:798897 1.04E-09 dispersed
Lsi01g00082 Lsi-Chr1:798897 Lsi02g00943 Lsi-Chr2:9334771 4.45E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00082 K12486 - csv:101218116 573.933