Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00084 ATGGGCTCCTTATATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGAAGCTCAGAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCAGCATCGCAACCCCAAATCAGTATGTAACGTCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCGTATGAAGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATCCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGCCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCATACTTGCATGAGTCTCGACATCTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGACGAGAACTGATGTCTGAGGCATTGTTGGTGAATGGTGAACAGCGCATCTCAACAATTATTGGCACAGTACATATAAATGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGATCTCAGTGTTGACAGTTTTCTCATATTTGCTTGTTCCTGCATTGAAGTAG 675 44.3 MGSLYNGEADEQQKYSEAQNHSSSVINGLNQPSIATPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYEAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRELMSEALLVNGEQRISTIIGTVHINADVAETFMGSFVMEGDGVDKRISVLTVFSYLLVPALK 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 819804 825552 + Lsi01G000840.1 Lsi01g00084 652742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00084 224 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 166 IPR001289 GO:0003700|GO:0006355
Lsi01g00084 224 SMART cbf3 105 166 IPR001289 GO:0003700|GO:0006355
Lsi01g00084 224 ProSitePatterns NF-YA/HAP2 subunit signature. 111 131 IPR018362 GO:0003677|GO:0016602
Lsi01g00084 224 PRINTS CCAAT-binding transcription factor subunit B signature 140 163 IPR001289 GO:0003700|GO:0006355
Lsi01g00084 224 PRINTS CCAAT-binding transcription factor subunit B signature 109 131 IPR001289 GO:0003700|GO:0006355
Lsi01g00084 224 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 7 166 - -
Lsi01g00084 224 MobiDBLite consensus disorder prediction 1 31 - -
Lsi01g00084 224 Gene3D - 106 166 - -
Lsi01g00084 224 ProSiteProfiles NF-YA/HAP2 family profile. 106 166 IPR001289 GO:0003700|GO:0006355
Lsi01g00084 224 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 108 162 IPR001289 GO:0003700|GO:0006355
Lsi01g00084 224 MobiDBLite consensus disorder prediction 9 31 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00084 Lsi-Chr1:819804 Lsi06g00527 Lsi-Chr6:6472242 6.46E-31 dispersed
Lsi01g00084 Lsi-Chr1:819804 Lsi02g02572 Lsi-Chr2:32168608 1.02E-35 transposed
Lsi01g00084 Lsi-Chr1:819804 Lsi10g01067 Lsi-Chr10:14907187 3.59E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24545 PF02045 CBFB_NFYA 1.30E-24 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00084 K08064 - csv:101205549 271.552