Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00085 ATGGCGCTTGTTATGCACAAAGATTCATCAAACAAACAAATGGATTCAAGCAAATACGTACGGTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCGAAGCCTAGTTCTCTCAGAAGGCAGCAGCTCATTAGAGAGTGCCCAATCCTTTCTAACATTGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAGAGGAAGGAATCATCTCGCCTCCAGAGCGTAAATAGAAAGTTGTCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATCCTAATAGGGATGTTAACAACCCAGCTGGTCTTCTCGCGGTAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGCAGTGGGGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCGACAAAGGTTGCAGAAATTCTCAAAGATCGCCTGTCATGGTATCGTGACTGCCGCTGTCTTAATGTTTTAAGTGTAATTCCTACAGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACTTATGCTCCAACGACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGATTTGTGAGAGGTCGTTATCTTCTTCAAGCGGTGGCCCAGCTGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATTTAATACGAGCGTGCGAGGGTGGTGGATCTATTATTCACATCGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAGTCATCCAAGATCCTTGCTCAGAAAATGACAATTGCTGCATTGCGTCACATTAGACAAATTGCTCAAGAGACTAACGGAGAGATTCAATTTACTGGCGGACGTCAACCAGCTGTACTACGGACGTTTAGTCAAAAACTTTGCAGGGGTTTCAACGATGCTGTCAATGGGTTTGCTGATGATGGTTGGTCACCTATGGGCAGTGATGGTGTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTTCCTGGATCCCAGTATAACACGTCGTTGTATCCCTCTTTTGGCGGAGGAGTGATGTGTGCCAAAGCGTCGATGTTGCTTCAGAATGTTCCCCCTGCTTTGCTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTACGGAGTTGATGCCTACTCTGCCGCAAGTTTAAAAGCCAGTCCGTATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAGGTTATTTTGCCCCTTGCTCCTACTGTGGAGCACGAGGAGTTTTTGGAGGTGGTTCGGTTGGAGGGCCTTGCATTCTCTCCCGAAGATGTTGCATTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGTGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCCGATGATGCTCCCCTACTTCCTTCAGGTTTTCGTGTCATACCGCTGGATCCAAAAACGGATGAACCTACTGCTGCTAGAACGTTAGATTTGGCCTCTACACTTGAAGTTGGTGGCAATGCTGCACGTTCTGCTGGTGAAACTGATTTGAGCAGCTACAACCTTCGTTCAGTCTTGACTATTGCTTTCCAGTTCACCTTTGAGAATCACTTACAGGAAAATGTGGCTGCTATGGCCCGACAATACGTTCGTAGTGTTGTGGGGTCCGTTCAGAGGGTTGCCATGGCCATTTCCCCTTCGCGGTTGAGTTCCAATATGGGACTAAAGCCTCTTCCTGGTTCTCCTGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGCTGAACTCCTTCAAGCCGATTCCCAGTCTGGGGATGCCATGTTGAAGAAGCTCTGGCACCACTCCGACGCAATCATGTGTTGCTCTGTTAAAACCAATGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTTGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTCGACAAAATTCTCGATGAGGCGGGTCGGAAGGTTCTTTGCTCTGAGTTCCCCAAAATAATGCAGCAGGGGTTCGCAAATCTTCCCTCGGGCATTTGCGTATCCAGTATGGGCCGTCCCATTTCTTATGAGCAAGCCGTTGCCTGGAAGGTTCTAAATGATGATGATTCTAATCACTGCCTAGCTTTCATGTTCATCAACTGGTCCTTTGTTTGA 2544 47.37 MALVMHKDSSNKQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVICERSLSSSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETNGEIQFTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGVEDVTIVINSSANKFPGSQYNTSLYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGGNAARSAGETDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAISPSRLSSNMGLKPLPGSPEALTLARWICRSYRIHVGAELLQADSQSGDAMLKKLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKVLCSEFPKIMQQGFANLPSGICVSSMGRPISYEQAVAWKVLNDDDSNHCLAFMFINWSFV 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 832790 839649 + Lsi01G000850.1 Lsi01g00085 652743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00085 847 CDD homeodomain 18 78 IPR001356 GO:0003677
Lsi01g00085 847 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Lsi01g00085 847 Coils Coil 83 107 - -
Lsi01g00085 847 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Lsi01g00085 847 Gene3D - 9 85 - -
Lsi01g00085 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 847 - -
Lsi01g00085 847 CDD bZIP 70 109 - -
Lsi01g00085 847 SUPERFAMILY Bet v1-like 167 378 - -
Lsi01g00085 847 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Lsi01g00085 847 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Lsi01g00085 847 SMART HOX_1 15 81 IPR001356 GO:0003677
Lsi01g00085 847 MobiDBLite consensus disorder prediction 123 157 - -
Lsi01g00085 847 Pfam START domain 167 374 IPR002913 GO:0008289
Lsi01g00085 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 847 IPR044830 GO:0003700
Lsi01g00085 847 SMART START_1 166 376 IPR002913 GO:0008289
Lsi01g00085 847 Pfam MEKHLA domain 702 846 IPR013978 -
Lsi01g00085 847 Gene3D - 200 384 IPR023393 -
Lsi01g00085 847 MobiDBLite consensus disorder prediction 123 160 - -
Lsi01g00085 847 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00085 Lsi-Chr1:832790 Lsi10g01265 Lsi-Chr10:16918673 2.67E-149 dispersed
Lsi02g02997 Lsi-Chr2:36053588 Lsi01g00085 Lsi-Chr1:832790 9.96E-42 transposed
Lsi03g00048 Lsi-Chr3:754696 Lsi01g00085 Lsi-Chr1:832790 1.29E-28 transposed
Lsi04g02325 Lsi-Chr4:30462708 Lsi01g00085 Lsi-Chr1:832790 4.61E-49 transposed
Lsi05g01165 Lsi-Chr5:19596640 Lsi01g00085 Lsi-Chr1:832790 6.58E-10 transposed
Lsi01g00085 Lsi-Chr1:832790 Lsi02g00942 Lsi-Chr2:9312445 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24546 PF01852 START 2.30E-49 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00085 K09338 - csv:101210154 1642.48