Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00116 ATGAAGTCGCCGATTGAAGAGTTGTCGAAACCGGCTTCGGCTGAGATTTTGGGCGGTGGGGGTTGGGTTGTGATATTCCCAGATGAGGTTCCACTGTTTGTAGTTTACTTTTTGAAGATTCAGATTGATTTGCTGGTCGATTTATGGTATTTCTGTAGTGATAAGAAAGATCTCACTGAAATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGAGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACCGAGAAGTGGATGCCCATATACCCAGTTATCCAAGCTTGCCTCCGCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACGGATGAAGTGTACGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGCTGGGTGCTCCTAGCAAACAACCAACCAATTATTTTTGTAAGACATTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAGCAGCCACCTGCTCAGGAGTTAATTGCCAAGGATCTGCATGATAATGATTGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCCGGCGATTCGGTTATCTTTATTTGGAATGAAAAGAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTGATGCCCTCATCGGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGTCGGTTCACAATATTTTATAATCCAAGGGCTAGCCCATCAGAATTCATCATACCTCTGGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGCGTTCGTCGTTACATGGGCACTATTACTGGTATCAGCGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCCGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCCTCTTTCCATGTTTCCCCTAGCCTTCTGTATGTTGTATTGAGCTATCAAGAGAAGTATTCCTCTGTTGCATCTAATGAACTTGGCTGTCCGCTTCCTGTCTCAGGTCTTAAAGAGGATGATCTAGGATTGAATTCTCAACTGATGTGGCTACGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAGCTTCCCCGGTATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTGGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGCGCAGGCTGCTTCGTTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCATCTCAGATGTTGCAGCAGCCTCAGCCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAATCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCCACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACAACCAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCAAATGCCAACCATGTAACAAGTCCTATCATTTCACCCTTGCACAGCTTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTTCCTCGAACCAATCCCATGATACATTCATCTACATGGCCATCAAAACGAGCTGCAGTCGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATACTATTTCGTTGCCGCCTTTTCCTGGGAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCCATACCTTTTTCATCCAATTATGTGAATACTGCTGGTACCAACTTCTCTGCCAATCCAAATGGGACAGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTCGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCAGCCTTGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAGTTTGTCAACAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACGTGGCTTAGAGCTCTTGAACTCGGTCCCGATTCAAAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAACAGACAGGAGTCATCCAGAAATTTGAGTACCGGGATAACTTCTGTTGGGTCTCTCGAGTACTGA 2994 46.36 MKSPIEELSKPASAEILGGGGWVVIFPDEVPLFVVYFLKIQIDLLVDLWYFCSDKKDLTEMRLSTAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIAKDLHDNDWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHVSPSLLYVVLSYQEKYSSVASNELGCPLPVSGLKEDDLGLNSQLMWLRGDGLDRGIQPLSFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASFLQFQQTQNLPNRPTFMPSQMLQQPQPQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNNQQQQQQQQQQQQQQPQQQVFDHQQIPSPISTMSQFSSASQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNTISLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGTNFSANPNGTGTPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFSLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1225345 1230878 + Lsi01G001160.1 Lsi01g00116 652774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00116 997 Pfam AUX/IAA family 854 952 IPR033389 -
Lsi01g00116 997 ProSiteProfiles PB1 domain profile. 863 947 IPR000270 GO:0005515
Lsi01g00116 997 SUPERFAMILY CAD & PB1 domains 855 938 - -
Lsi01g00116 997 ProSiteProfiles B3 DNA-binding domain profile. 187 289 IPR003340 GO:0003677
Lsi01g00116 997 Pfam B3 DNA binding domain 187 288 IPR003340 GO:0003677
Lsi01g00116 997 Pfam Auxin response factor 313 396 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi01g00116 997 MobiDBLite consensus disorder prediction 564 641 - -
Lsi01g00116 997 SMART B3_2 187 289 IPR003340 GO:0003677
Lsi01g00116 997 Gene3D - 860 952 - -
Lsi01g00116 997 Gene3D - 351 423 - -
Lsi01g00116 997 Gene3D - 185 288 IPR015300 -
Lsi01g00116 997 PANTHER AUXIN RESPONSE FACTOR 6 61 975 - -
Lsi01g00116 997 SUPERFAMILY DNA-binding pseudobarrel domain 172 316 IPR015300 -
Lsi01g00116 997 CDD B3_DNA 186 287 IPR003340 GO:0003677
Lsi01g00116 997 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 61 975 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00116 Lsi-Chr1:1225345 Lsi11g00812 Lsi-Chr11:9994471 2.31E-31 dispersed
Lsi01g01337 Lsi-Chr1:11579871 Lsi01g00116 Lsi-Chr1:1225345 1.28E-75 dispersed
Lsi01g00279 Lsi-Chr1:2484558 Lsi01g00116 Lsi-Chr1:1225345 2.44E-108 transposed
Lsi02g02036 Lsi-Chr2:26424205 Lsi01g00116 Lsi-Chr1:1225345 5.50E-14 transposed
Lsi02g02037 Lsi-Chr2:26424809 Lsi01g00116 Lsi-Chr1:1225345 1.12E-114 transposed
Lsi04g01726 Lsi-Chr4:24579151 Lsi01g00116 Lsi-Chr1:1225345 3.02E-35 transposed
Lsi06g01682 Lsi-Chr6:27009010 Lsi01g00116 Lsi-Chr1:1225345 1.85E-16 transposed
Lsi09g00162 Lsi-Chr9:1700937 Lsi01g00116 Lsi-Chr1:1225345 6.07E-16 transposed
Lsi09g00876 Lsi-Chr9:10198003 Lsi01g00116 Lsi-Chr1:1225345 0 transposed
Lsi09g00877 Lsi-Chr9:10219872 Lsi01g00116 Lsi-Chr1:1225345 1.47E-109 transposed
Lsi10g01284 Lsi-Chr10:17084884 Lsi01g00116 Lsi-Chr1:1225345 6.74E-19 transposed
Lsi11g00096 Lsi-Chr11:993183 Lsi01g00116 Lsi-Chr1:1225345 4.03E-15 transposed
Lsi11g00146 Lsi-Chr11:1625449 Lsi01g00116 Lsi-Chr1:1225345 1.96E-27 transposed
Lsi01g00116 Lsi-Chr1:1225345 Lsi02g00922 Lsi-Chr2:8889744 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24548 PF02309 AUX_IAA 1.60E-07 CL0072 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00116 - - csv:101210406 1663.28