Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00116 ATGAAGTCGCCGATTGAAGAGTTGTCGAAACCGGCTTCGGCTGAGATTTTGGGCGGTGGGGGTTGGGTTGTGATATTCCCAGATGAGGTTCCACTGTTTGTAGTTTACTTTTTGAAGATTCAGATTGATTTGCTGGTCGATTTATGGTATTTCTGTAGTGATAAGAAAGATCTCACTGAAATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGAGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACCGAGAAGTGGATGCCCATATACCCAGTTATCCAAGCTTGCCTCCGCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACGGATGAAGTGTACGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGCTGGGTGCTCCTAGCAAACAACCAACCAATTATTTTTGTAAGACATTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAGCAGCCACCTGCTCAGGAGTTAATTGCCAAGGATCTGCATGATAATGATTGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCCGGCGATTCGGTTATCTTTATTTGGAATGAAAAGAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTGATGCCCTCATCGGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGTCGGTTCACAATATTTTATAATCCAAGGGCTAGCCCATCAGAATTCATCATACCTCTGGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGCGTTCGTCGTTACATGGGCACTATTACTGGTATCAGCGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCCGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCCTCTTTCCATGTTTCCCCTAGCCTTCTGTATGTTGTATTGAGCTATCAAGAGAAGTATTCCTCTGTTGCATCTAATGAACTTGGCTGTCCGCTTCCTGTCTCAGGTCTTAAAGAGGATGATCTAGGATTGAATTCTCAACTGATGTGGCTACGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAGCTTCCCCGGTATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTGGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGCGCAGGCTGCTTCGTTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCATCTCAGATGTTGCAGCAGCCTCAGCCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAATCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCCACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACAACCAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCAAATGCCAACCATGTAACAAGTCCTATCATTTCACCCTTGCACAGCTTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTTCCTCGAACCAATCCCATGATACATTCATCTACATGGCCATCAAAACGAGCTGCAGTCGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATACTATTTCGTTGCCGCCTTTTCCTGGGAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCCATACCTTTTTCATCCAATTATGTGAATACTGCTGGTACCAACTTCTCTGCCAATCCAAATGGGACAGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTCGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCAGCCTTGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAGTTTGTCAACAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACGTGGCTTAGAGCTCTTGAACTCGGTCCCGATTCAAAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAACAGACAGGAGTCATCCAGAAATTTGAGTACCGGGATAACTTCTGTTGGGTCTCTCGAGTACTGA 2994 46.36 MKSPIEELSKPASAEILGGGGWVVIFPDEVPLFVVYFLKIQIDLLVDLWYFCSDKKDLTEMRLSTAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIAKDLHDNDWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHVSPSLLYVVLSYQEKYSSVASNELGCPLPVSGLKEDDLGLNSQLMWLRGDGLDRGIQPLSFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASFLQFQQTQNLPNRPTFMPSQMLQQPQPQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNNQQQQQQQQQQQQQQPQQQVFDHQQIPSPISTMSQFSSASQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNTISLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGTNFSANPNGTGTPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFSLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1225345 1230878 + Lsi01G001160.1 Lsi01g00116 652774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00116 997 Pfam AUX/IAA family 854 952 IPR033389 -
Lsi01g00116 997 ProSiteProfiles PB1 domain profile. 863 947 IPR000270 GO:0005515
Lsi01g00116 997 SUPERFAMILY CAD & PB1 domains 855 938 - -
Lsi01g00116 997 ProSiteProfiles B3 DNA-binding domain profile. 187 289 IPR003340 GO:0003677
Lsi01g00116 997 Pfam B3 DNA binding domain 187 288 IPR003340 GO:0003677
Lsi01g00116 997 Pfam Auxin response factor 313 396 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi01g00116 997 MobiDBLite consensus disorder prediction 564 641 - -
Lsi01g00116 997 SMART B3_2 187 289 IPR003340 GO:0003677
Lsi01g00116 997 Gene3D - 860 952 - -
Lsi01g00116 997 Gene3D - 351 423 - -
Lsi01g00116 997 Gene3D - 185 288 IPR015300 -
Lsi01g00116 997 PANTHER AUXIN RESPONSE FACTOR 6 61 975 - -
Lsi01g00116 997 SUPERFAMILY DNA-binding pseudobarrel domain 172 316 IPR015300 -
Lsi01g00116 997 CDD B3_DNA 186 287 IPR003340 GO:0003677
Lsi01g00116 997 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 61 975 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00116 - - - csv:101210406 1663.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00116 Lsi-Chr1:1225345 Lsi11g00812 Lsi-Chr11:9994471 2.31E-31 dispersed
Lsi01g01337 Lsi-Chr1:11579871 Lsi01g00116 Lsi-Chr1:1225345 1.28E-75 dispersed
Lsi01g00279 Lsi-Chr1:2484558 Lsi01g00116 Lsi-Chr1:1225345 2.44E-108 transposed
Lsi02g02036 Lsi-Chr2:26424205 Lsi01g00116 Lsi-Chr1:1225345 5.50E-14 transposed
Lsi02g02037 Lsi-Chr2:26424809 Lsi01g00116 Lsi-Chr1:1225345 1.12E-114 transposed
Lsi04g01726 Lsi-Chr4:24579151 Lsi01g00116 Lsi-Chr1:1225345 3.02E-35 transposed
Lsi06g01682 Lsi-Chr6:27009010 Lsi01g00116 Lsi-Chr1:1225345 1.85E-16 transposed
Lsi09g00162 Lsi-Chr9:1700937 Lsi01g00116 Lsi-Chr1:1225345 6.07E-16 transposed
Lsi09g00876 Lsi-Chr9:10198003 Lsi01g00116 Lsi-Chr1:1225345 0 transposed
Lsi09g00877 Lsi-Chr9:10219872 Lsi01g00116 Lsi-Chr1:1225345 1.47E-109 transposed
Lsi10g01284 Lsi-Chr10:17084884 Lsi01g00116 Lsi-Chr1:1225345 6.74E-19 transposed
Lsi11g00096 Lsi-Chr11:993183 Lsi01g00116 Lsi-Chr1:1225345 4.03E-15 transposed
Lsi11g00146 Lsi-Chr11:1625449 Lsi01g00116 Lsi-Chr1:1225345 1.96E-27 transposed
Lsi01g00116 Lsi-Chr1:1225345 Lsi02g00922 Lsi-Chr2:8889744 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g479 . . . . . Bpe01g00841 Bma14g00953 . . Cmo18g00468 . Cma07g00079 . Car07g00075 . . Cpe10g00065 . . . . . . . . . . . . . . . . . . Lsi01g00116 . . . . . . . . Bpe08g00619 . . . . Cmo07g00080 . . . . . Cpe20g00544 . . . . . . . . . . . . . . . . Chy02g00116 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00307 . 26 133 B3 DNA Binding Superfamily AT1G28300 69.4 1.7e-38 157.1
Lsi04g00288 . 1 350 B3 DNA Binding Superfamily AT1G25560 58.5 4.1e-106 381.7
Lsi09g01022 . 29 317 B3 DNA Binding Superfamily AT1G25560 61.9 1.2e-92 337.0
Lsi03g01863 . 44 155 B3 DNA Binding Superfamily AT1G25560 67.0 2.2e-38 156.8
Lsi09g00114 . 50 158 B3 DNA Binding Superfamily AT1G25560 66.1 4.1e-37 152.5
Lsi09g01706 . 84 201 B3 DNA Binding Superfamily AT1G25560 60.3 1.2e-36 151.0
Lsi09g00114 . 49 163 B3 DNA Binding Superfamily AT1G01030 82.8 2.9e-53 206.1
Lsi04g00288 . 183 308 B3 DNA Binding Superfamily AT1G01030 62.2 2.0e-38 156.8
Lsi10g01262 . 4 687 B3 DNA Binding Superfamily AT4G30080 57.4 1.6e-212 736.1
Lsi01g01337 . 7 723 B3 DNA Binding Superfamily AT4G30080 56.4 4.7e-212 734.6
Lsi08g00720 . 5 683 B3 DNA Binding Superfamily AT4G30080 54.5 3.8e-198 688.3
Lsi02g01207 . 4 736 B3 DNA Binding Superfamily AT2G30470 53.0 6.3e-200 694.5
Lsi03g02281 . 29 495 B3 DNA Binding Superfamily AT2G30470 57.0 1.9e-132 470.3
Lsi03g02281 . 28 571 B3 DNA Binding Superfamily AT4G32010 52.5 3.8e-141 499.2
Lsi10g00322 . 16 380 B3 DNA Binding Superfamily AT3G18990 58.1 5.2e-104 374.8
Lsi11g00096 . 54 703 B3 DNA Binding Superfamily AT1G59750 62.0 1.2e-220 763.1
Lsi02g02037 . 14 405 B3 DNA Binding Superfamily AT1G59750 63.1 9.5e-141 497.7
Lsi01g00116 . 83 449 B3 DNA Binding Superfamily AT1G59750 55.0 1.4e-107 387.5
Lsi11g00146 . 23 380 B3 DNA Binding Superfamily AT1G59750 53.4 2.7e-103 373.2
Lsi02g00922 . 149 514 B3 DNA Binding Superfamily AT1G59750 53.2 6.0e-103 372.1
Lsi09g00877 . 163 326 B3 DNA Binding Superfamily AT1G59750 56.4 2.7e-47 187.2
Lsi10g01262 . 3 687 B3 DNA Binding Superfamily AT2G28350 58.2 3.0e-211 731.9
Lsi01g01337 . 6 723 B3 DNA Binding Superfamily AT2G28350 52.9 4.4e-194 674.9
Lsi08g00720 . 13 682 B3 DNA Binding Superfamily AT2G28350 51.9 1.6e-175 613.2
Lsi09g00162 . 18 671 B3 DNA Binding Superfamily AT2G46530 54.0 1.1e-178 623.6
Lsi07g00734 . 3 704 B3 DNA Binding Superfamily AT2G46530 50.9 4.5e-169 591.7
Lsi02g02037 . 14 390 B3 DNA Binding Superfamily AT2G46530 72.8 1.6e-153 540.0
Lsi01g00116 . 61 428 B3 DNA Binding Superfamily AT2G46530 51.1 3.5e-97 352.8
Lsi02g00922 . 146 499 B3 DNA Binding Superfamily AT2G46530 51.3 2.6e-92 336.7
Lsi09g00877 . 154 326 B3 DNA Binding Superfamily AT2G46530 54.6 1.1e-45 181.8
Lsi02g02037 . 20 386 B3 DNA Binding Superfamily AT1G34310 52.6 9.5e-108 387.9
Lsi02g02037 . 20 385 B3 DNA Binding Superfamily AT1G35540 53.8 2.9e-112 402.9
Lsi02g02037 . 20 386 B3 DNA Binding Superfamily AT1G35520 53.3 2.5e-108 389.8
Lsi10g01262 . 4 687 B3 DNA Binding Superfamily AT4G30080 57.4 1.6e-212 736.1
Lsi01g01337 . 7 723 B3 DNA Binding Superfamily AT4G30080 56.4 4.7e-212 734.6
Lsi08g00720 . 5 683 B3 DNA Binding Superfamily AT4G30080 54.5 3.8e-198 688.3
Lsi09g00162 . 54 667 B3 DNA Binding Superfamily AT3G61830 51.5 9.3e-158 553.9
Lsi02g02037 . 50 455 B3 DNA Binding Superfamily AT3G61830 62.6 1.3e-138 490.3
Lsi01g00116 . 111 424 B3 DNA Binding Superfamily AT3G61830 52.5 3.6e-85 312.8
Lsi02g00922 . 177 495 B3 DNA Binding Superfamily AT3G61830 50.9 3.2e-81 299.7
Lsi11g00146 . 1 1096 B3 DNA Binding Superfamily AT1G19220 61.7 0.0e+00 1171.8
Lsi06g01682 . 41 396 B3 DNA Binding Superfamily AT1G19220 52.2 4.4e-103 373.2
Lsi01g00279 . 46 379 B3 DNA Binding Superfamily AT1G19220 50.1 3.9e-91 333.6
Lsi09g00877 . 140 326 B3 DNA Binding Superfamily AT1G19220 68.6 2.0e-71 268.1
Lsi02g02037 . 20 388 B3 DNA Binding Superfamily AT1G35240 52.7 5.0e-109 392.1
Lsi02g02037 . 20 386 B3 DNA Binding Superfamily AT1G34410 53.1 2.1e-110 396.7
Lsi02g02037 . 20 386 B3 DNA Binding Superfamily AT1G34390 54.6 6.4e-112 401.7
Lsi02g02037 . 20 224 B3 DNA Binding Superfamily AT1G43950 55.6 1.2e-58 223.4
Lsi09g00162 . 24 228 B3 DNA Binding Superfamily AT1G43950 55.3 7.5e-58 220.7
Lsi06g01682 . 41 246 B3 DNA Binding Superfamily AT1G43950 52.9 2.9e-57 218.8
Lsi01g00279 . 149 443 B3 DNA Binding Superfamily AT2G33860 66.4 1.4e-111 400.2
Lsi10g01284 . 168 451 B3 DNA Binding Superfamily AT2G33860 57.3 1.0e-90 330.9
Lsi06g01682 . 147 436 B3 DNA Binding Superfamily AT2G33860 51.0 3.3e-76 282.7
Lsi01g00116 . 187 418 B3 DNA Binding Superfamily AT2G33860 56.0 3.5e-70 262.7
Lsi11g00146 . 126 356 B3 DNA Binding Superfamily AT2G33860 54.5 6.6e-69 258.5
Lsi02g00922 . 253 489 B3 DNA Binding Superfamily AT2G33860 54.9 4.3e-68 255.8
Lsi02g02037 . 125 352 B3 DNA Binding Superfamily AT2G33860 52.8 2.3e-66 250.0
Lsi09g00162 . 129 356 B3 DNA Binding Superfamily AT2G33860 50.6 1.1e-63 241.1
Lsi10g01284 . 48 789 B3 DNA Binding Superfamily AT5G60450 60.4 1.5e-246 849.4
Lsi01g00279 . 41 445 B3 DNA Binding Superfamily AT5G60450 56.1 2.1e-123 440.3
Lsi02g00922 . 146 508 B3 DNA Binding Superfamily AT5G60450 50.9 7.2e-100 362.1
Lsi11g00146 . 14 374 B3 DNA Binding Superfamily AT5G60450 50.1 7.9e-99 358.6
Lsi09g00877 . 155 326 B3 DNA Binding Superfamily AT5G60450 54.4 4.6e-46 183.3
Lsi04g01726 . 8 966 B3 DNA Binding Superfamily AT1G19850 59.1 3.8e-286 981.1
Lsi02g02037 . 20 351 B3 DNA Binding Superfamily AT1G19850 50.3 9.0e-94 342.0
Lsi09g00877 . 150 326 B3 DNA Binding Superfamily AT1G19850 63.1 2.5e-64 244.2
Lsi01g00116 . 61 993 B3 DNA Binding Superfamily AT1G30330 66.1 0.0e+00 1170.2
Lsi02g00922 . 142 1041 B3 DNA Binding Superfamily AT1G30330 70.0 0.0e+00 1155.6
Lsi09g00876 . 4 684 B3 DNA Binding Superfamily AT1G30330 51.3 4.9e-159 558.9
Lsi06g01682 . 41 395 B3 DNA Binding Superfamily AT1G30330 52.8 2.7e-101 367.1
Lsi02g02037 . 7 352 B3 DNA Binding Superfamily AT1G30330 53.3 2.2e-98 357.5
Lsi09g00162 . 24 397 B3 DNA Binding Superfamily AT1G30330 50.1 4.8e-98 356.3
Lsi09g00877 . 140 326 B3 DNA Binding Superfamily AT1G30330 86.7 3.6e-93 340.1
Lsi11g00146 . 1 1093 B3 DNA Binding Superfamily AT5G20730 58.3 0.0e+00 1102.4
Lsi02g00922 . 142 618 B3 DNA Binding Superfamily AT5G20730 57.7 1.3e-145 514.6
Lsi06g01682 . 41 393 B3 DNA Binding Superfamily AT5G20730 52.3 6.8e-102 369.4
Lsi09g00876 . 2 290 B3 DNA Binding Superfamily AT5G20730 50.5 3.7e-68 257.3
Lsi09g00877 . 140 326 B3 DNA Binding Superfamily AT5G20730 65.4 1.4e-67 255.4
Lsi09g00876 . 2 653 B3 DNA Binding Superfamily AT5G37020 60.0 8.3e-199 690.6
Lsi01g00116 . 157 955 B3 DNA Binding Superfamily AT5G37020 51.6 9.1e-198 687.2
Lsi02g00922 . 223 1004 B3 DNA Binding Superfamily AT5G37020 50.5 1.7e-183 639.8
Lsi11g00146 . 96 420 B3 DNA Binding Superfamily AT5G37020 62.4 3.8e-111 399.4
Lsi11g00812 . 104 432 B3 DNA Binding Superfamily AT5G37020 51.8 6.5e-87 318.9
Lsi02g02037 . 118 352 B3 DNA Binding Superfamily AT5G37020 56.1 2.7e-72 270.4
Lsi09g00877 . 237 326 B3 DNA Binding Superfamily AT5G37020 88.9 3.4e-43 173.7
Lsi09g00162 . 18 672 B3 DNA Binding Superfamily AT4G23980 57.2 9.0e-197 683.7
Lsi07g00734 . 2 730 B3 DNA Binding Superfamily AT4G23980 52.9 3.5e-193 671.8
Lsi02g02037 . 17 588 B3 DNA Binding Superfamily AT4G23980 54.8 1.1e-157 553.9
Lsi01g00116 . 80 436 B3 DNA Binding Superfamily AT4G23980 51.3 2.3e-96 350.1
Lsi06g01682 . 1 846 B3 DNA Binding Superfamily AT5G62000 61.2 4.0e-293 1004.2
Lsi02g02037 . 20 352 B3 DNA Binding Superfamily AT5G62000 68.5 1.6e-135 480.7
Lsi11g00146 . 23 381 B3 DNA Binding Superfamily AT5G62000 54.0 4.4e-106 382.9
Lsi09g00877 . 160 326 B3 DNA Binding Superfamily AT5G62000 57.5 6.5e-49 193.0
Lsi01g00307 . 26 133 B3 DNA Binding Superfamily AT1G28300 69.4 1.7e-38 157.1
Lsi02g01207 . 4 736 B3 DNA Binding Superfamily AT2G30470 53.0 6.3e-200 694.5
Lsi03g02281 . 29 495 B3 DNA Binding Superfamily AT2G30470 57.0 1.9e-132 470.3
Lsi03g02281 . 28 571 B3 DNA Binding Superfamily AT4G32010 52.5 3.8e-141 499.2
Lsi11g00146 . 1 1096 B3 DNA Binding Superfamily AT1G19220 61.7 0.0e+00 1171.8
Lsi06g01682 . 41 396 B3 DNA Binding Superfamily AT1G19220 52.2 4.4e-103 373.2
Lsi01g00279 . 46 379 B3 DNA Binding Superfamily AT1G19220 50.1 3.9e-91 333.6
Lsi09g00877 . 140 326 B3 DNA Binding Superfamily AT1G19220 68.6 2.0e-71 268.1
Lsi04g01726 . 8 966 B3 DNA Binding Superfamily AT1G19850 59.1 3.8e-286 981.1
Lsi02g02037 . 20 351 B3 DNA Binding Superfamily AT1G19850 50.3 9.0e-94 342.0
Lsi09g00877 . 150 326 B3 DNA Binding Superfamily AT1G19850 63.1 2.5e-64 244.2
Lsi01g00116 . 61 993 B3 DNA Binding Superfamily AT1G30330 66.1 0.0e+00 1170.2
Lsi02g00922 . 142 1041 B3 DNA Binding Superfamily AT1G30330 70.0 0.0e+00 1155.6
Lsi09g00876 . 4 684 B3 DNA Binding Superfamily AT1G30330 51.3 4.9e-159 558.9
Lsi06g01682 . 41 395 B3 DNA Binding Superfamily AT1G30330 52.8 2.7e-101 367.1
Lsi02g02037 . 7 352 B3 DNA Binding Superfamily AT1G30330 53.3 2.2e-98 357.5
Lsi09g00162 . 24 397 B3 DNA Binding Superfamily AT1G30330 50.1 4.8e-98 356.3
Lsi09g00877 . 140 326 B3 DNA Binding Superfamily AT1G30330 86.7 3.6e-93 340.1
Lsi11g00146 . 1 1093 B3 DNA Binding Superfamily AT5G20730 58.3 0.0e+00 1102.4
Lsi02g00922 . 142 618 B3 DNA Binding Superfamily AT5G20730 57.7 1.3e-145 514.6
Lsi06g01682 . 41 393 B3 DNA Binding Superfamily AT5G20730 52.3 6.8e-102 369.4
Lsi09g00876 . 2 290 B3 DNA Binding Superfamily AT5G20730 50.5 3.7e-68 257.3
Lsi09g00877 . 140 326 B3 DNA Binding Superfamily AT5G20730 65.4 1.4e-67 255.4
Lsi09g00876 . 2 653 B3 DNA Binding Superfamily AT5G37020 60.0 8.3e-199 690.6
Lsi01g00116 . 157 955 B3 DNA Binding Superfamily AT5G37020 51.6 9.1e-198 687.2
Lsi02g00922 . 223 1004 B3 DNA Binding Superfamily AT5G37020 50.5 1.7e-183 639.8
Lsi11g00146 . 96 420 B3 DNA Binding Superfamily AT5G37020 62.4 3.8e-111 399.4
Lsi11g00812 . 104 432 B3 DNA Binding Superfamily AT5G37020 51.8 6.5e-87 318.9
Lsi02g02037 . 118 352 B3 DNA Binding Superfamily AT5G37020 56.1 2.7e-72 270.4
Lsi09g00877 . 237 326 B3 DNA Binding Superfamily AT5G37020 88.9 3.4e-43 173.7
Lsi01g00279 . 149 443 B3 DNA Binding Superfamily AT2G33860 66.4 1.4e-111 400.2
Lsi10g01284 . 168 451 B3 DNA Binding Superfamily AT2G33860 57.3 1.0e-90 330.9
Lsi06g01682 . 147 436 B3 DNA Binding Superfamily AT2G33860 51.0 3.3e-76 282.7
Lsi01g00116 . 187 418 B3 DNA Binding Superfamily AT2G33860 56.0 3.5e-70 262.7
Lsi11g00146 . 126 356 B3 DNA Binding Superfamily AT2G33860 54.5 6.6e-69 258.5
Lsi02g00922 . 253 489 B3 DNA Binding Superfamily AT2G33860 54.9 4.3e-68 255.8
Lsi02g02037 . 125 352 B3 DNA Binding Superfamily AT2G33860 52.8 2.3e-66 250.0
Lsi09g00162 . 129 356 B3 DNA Binding Superfamily AT2G33860 50.6 1.1e-63 241.1
Lsi10g01284 . 48 789 B3 DNA Binding Superfamily AT5G60450 60.4 1.5e-246 849.4
Lsi01g00279 . 41 445 B3 DNA Binding Superfamily AT5G60450 56.1 2.1e-123 440.3
Lsi02g00922 . 146 508 B3 DNA Binding Superfamily AT5G60450 50.9 7.2e-100 362.1
Lsi11g00146 . 14 374 B3 DNA Binding Superfamily AT5G60450 50.1 7.9e-99 358.6
Lsi09g00877 . 155 326 B3 DNA Binding Superfamily AT5G60450 54.4 4.6e-46 183.3
Lsi11g00096 . 54 703 B3 DNA Binding Superfamily AT1G59750 62.0 1.2e-220 763.1
Lsi02g02037 . 14 405 B3 DNA Binding Superfamily AT1G59750 63.1 9.5e-141 497.7
Lsi01g00116 . 83 449 B3 DNA Binding Superfamily AT1G59750 55.0 1.4e-107 387.5
Lsi11g00146 . 23 380 B3 DNA Binding Superfamily AT1G59750 53.4 2.7e-103 373.2
Lsi02g00922 . 149 514 B3 DNA Binding Superfamily AT1G59750 53.2 6.0e-103 372.1
Lsi09g00877 . 163 326 B3 DNA Binding Superfamily AT1G59750 56.4 2.7e-47 187.2
Lsi06g01682 . 1 846 B3 DNA Binding Superfamily AT5G62000 61.2 4.0e-293 1004.2
Lsi02g02037 . 20 352 B3 DNA Binding Superfamily AT5G62000 68.5 1.6e-135 480.7
Lsi11g00146 . 23 381 B3 DNA Binding Superfamily AT5G62000 54.0 4.4e-106 382.9
Lsi09g00877 . 160 326 B3 DNA Binding Superfamily AT5G62000 57.5 6.5e-49 193.0
Lsi09g00162 . 18 671 B3 DNA Binding Superfamily AT2G46530 54.0 1.1e-178 623.6
Lsi07g00734 . 3 704 B3 DNA Binding Superfamily AT2G46530 50.9 4.5e-169 591.7
Lsi02g02037 . 14 390 B3 DNA Binding Superfamily AT2G46530 72.8 1.6e-153 540.0
Lsi01g00116 . 61 428 B3 DNA Binding Superfamily AT2G46530 51.1 3.5e-97 352.8
Lsi02g00922 . 146 499 B3 DNA Binding Superfamily AT2G46530 51.3 2.6e-92 336.7
Lsi09g00877 . 154 326 B3 DNA Binding Superfamily AT2G46530 54.6 1.1e-45 181.8
Lsi09g00162 . 54 667 B3 DNA Binding Superfamily AT3G61830 51.5 9.3e-158 553.9
Lsi02g02037 . 50 455 B3 DNA Binding Superfamily AT3G61830 62.6 1.3e-138 490.3
Lsi01g00116 . 111 424 B3 DNA Binding Superfamily AT3G61830 52.5 3.6e-85 312.8
Lsi02g00922 . 177 495 B3 DNA Binding Superfamily AT3G61830 50.9 3.2e-81 299.7
Lsi09g00162 . 18 672 B3 DNA Binding Superfamily AT4G23980 57.2 9.0e-197 683.7
Lsi07g00734 . 2 730 B3 DNA Binding Superfamily AT4G23980 52.9 3.5e-193 671.8
Lsi02g02037 . 17 588 B3 DNA Binding Superfamily AT4G23980 54.8 1.1e-157 553.9
Lsi01g00116 . 80 436 B3 DNA Binding Superfamily AT4G23980 51.3 2.3e-96 350.1
Lsi02g02037 . 20 386 B3 DNA Binding Superfamily AT1G34310 52.6 9.5e-108 387.9
Lsi02g02037 . 20 386 B3 DNA Binding Superfamily AT1G34390 54.6 6.4e-112 401.7
Lsi02g02037 . 20 386 B3 DNA Binding Superfamily AT1G34410 53.1 2.1e-110 396.7
Lsi02g02037 . 20 388 B3 DNA Binding Superfamily AT1G35240 52.7 5.0e-109 392.1
Lsi02g02037 . 20 386 B3 DNA Binding Superfamily AT1G35520 53.3 2.5e-108 389.8
Lsi02g02037 . 20 385 B3 DNA Binding Superfamily AT1G35540 53.8 2.9e-112 402.9
Lsi02g02037 . 20 224 B3 DNA Binding Superfamily AT1G43950 55.6 1.2e-58 223.4
Lsi09g00162 . 24 228 B3 DNA Binding Superfamily AT1G43950 55.3 7.5e-58 220.7
Lsi06g01682 . 41 246 B3 DNA Binding Superfamily AT1G43950 52.9 2.9e-57 218.8
Lsi10g01262 . 3 687 B3 DNA Binding Superfamily AT2G28350 58.2 3.0e-211 731.9
Lsi01g01337 . 6 723 B3 DNA Binding Superfamily AT2G28350 52.9 4.4e-194 674.9
Lsi08g00720 . 13 682 B3 DNA Binding Superfamily AT2G28350 51.9 1.6e-175 613.2
Lsi10g01262 . 4 687 B3 DNA Binding Superfamily AT4G30080 57.4 1.6e-212 736.1
Lsi01g01337 . 7 723 B3 DNA Binding Superfamily AT4G30080 56.4 4.7e-212 734.6
Lsi08g00720 . 5 683 B3 DNA Binding Superfamily AT4G30080 54.5 3.8e-198 688.3
Lsi09g00114 . 49 163 B3 DNA Binding Superfamily AT1G01030 82.8 2.9e-53 206.1
Lsi04g00288 . 183 308 B3 DNA Binding Superfamily AT1G01030 62.2 2.0e-38 156.8
Lsi04g00288 . 1 350 B3 DNA Binding Superfamily AT1G25560 58.5 4.1e-106 381.7
Lsi09g01022 . 29 317 B3 DNA Binding Superfamily AT1G25560 61.9 1.2e-92 337.0
Lsi03g01863 . 44 155 B3 DNA Binding Superfamily AT1G25560 67.0 2.2e-38 156.8
Lsi09g00114 . 50 158 B3 DNA Binding Superfamily AT1G25560 66.1 4.1e-37 152.5
Lsi09g01706 . 84 201 B3 DNA Binding Superfamily AT1G25560 60.3 1.2e-36 151.0
Lsi03g00485 . 77 337 B3 DNA Binding Superfamily AT3G19184 55.9 5.3e-64 241.5
Lsi08g01456 . 56 279 B3 DNA Binding Superfamily AT3G19184 52.2 2.1e-49 193.0
Lsi08g01457 . 1 190 B3 DNA Binding Superfamily AT3G19184 54.1 7.9e-44 174.5
Lsi08g01457 . 29 197 B3 DNA Binding Superfamily AT5G42700 60.8 2.0e-51 199.1
Lsi08g01456 . 103 280 B3 DNA Binding Superfamily AT5G42700 53.9 4.5e-48 188.0
Lsi03g00485 . 150 322 B3 DNA Binding Superfamily AT5G42700 50.6 4.5e-40 161.4
Lsi10g00322 . 16 380 B3 DNA Binding Superfamily AT3G18990 58.1 5.2e-104 374.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001814 1 2 2 2 3 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 2 2 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24548 PF02309 AUX_IAA 1.60E-07 CL0072 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00116 Lsi_Chr01 FPKM 9.65544 9.963782 7.709025 7.414562 5.625417 5.235587 7.939139 7.909628 8.151263 8.362009