Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00124 ATGGCTTCCAGGTCCAGCAGTCATAGCAAAACGCGGGTGGGGAGATACGAGCTGGGACGAACCCTTGGAGAAGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACAGGGGAGAACGTAGCCATCAAAATCCTCGACAAAGAGAATATTCTCAAACACAAGATGATCGGGCAGATTAAGCGTGAAATATCCACTATGAAACTCATTAGACATCCAAATGTCATTCGCATGTATGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTAACTGGTGGAGAACTATTCGCCAAAATTGCGTGTAAGGGAAGATTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGTTAATAAATGCAGTGGATTATTGCCATAGCAGAGGTGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCTAGTGGTGTTCTGAAAATTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGACGATGGATTACTTCACACAACATGTGGAACACCCAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGGTACTATGGAGCAAAGGCTGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTACTTGCCGTTTGAAGAATCCAATCTCATGGCATTGTATAAAAAGATATTCAAGGCAGACTTCACATGTCCTCCATGGTTCTCTTCTAGTGCCAAGAAATTAATCAAGAGAATCCTGGATCCGAATCCATTAACTAGAATTACAATTGCTGAAGTCCTTGAGAATGATTGGTTTAAGAAAGGATACAAGCCACCCAGTTTCGAAAATGACGAAATCAGTATTGATAACGTTGATGACATCTTTAATGAATCAGGGGCCACCGATAACCTTGTTGTTGAGAGGAGAGAAGATAGATCTGCATCACTTGCATCACCTGTCACCATGAATGCATTTGAGCTCATCTCGAAATCTCGGGGCCTCAACCTTGCCACTCTTTTTGAGAAGCAAATGGGGCTAATTAAACGTGAAACAAGATTCACATCCAATTGTCCGGCAGATGAAATCATTTTGAAGATAAAAAACACTGCTGTTCCTTTGGGTTTTGATGTTAAGATCAATAACTTCAAGATGAAGCTTCAAGGGGAAAAAACTGGACGCAAAGGTCATTTATCAGTTGCAACAGAGTTCTATAATAACCTCTCAACTGGACTGAAAGATATCGTATGGAGATACGGAGACGAGATGGAGCAGGAAAGTAATGGTAAGCAAGTGCAGATTGTTGAAAATTCCATGTGA 1314 41.25 MASRSSSHSKTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKENILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFAKIACKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKISDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEESNLMALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKPPSFENDEISIDNVDDIFNESGATDNLVVERREDRSASLASPVTMNAFELISKSRGLNLATLFEKQMGLIKRETRFTSNCPADEIILKIKNTAVPLGFDVKINNFKMKLQGEKTGRKGHLSVATEFYNNLSTGLKDIVWRYGDEMEQESNGKQVQIVENSM 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1284522 1290630 - Lsi01G001240.1 Lsi01g00124 652782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00124 437 PANTHER SERINE/THREONINE KINASE 9 422 - -
Lsi01g00124 437 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00124 437 CDD STKc_SnRK3 15 270 - -
Lsi01g00124 437 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00124 437 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Lsi01g00124 437 Pfam NAF domain 318 377 IPR004041 GO:0007165
Lsi01g00124 437 Gene3D Transferase(Phosphotransferase) domain 1 96 278 - -
Lsi01g00124 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Lsi01g00124 437 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Lsi01g00124 437 Gene3D Kinase associated domain 1, KA1 316 416 - -
Lsi01g00124 437 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Lsi01g00124 437 CDD CIPK_C 322 403 - -
Lsi01g00124 437 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 422 - -
Lsi01g00124 437 SUPERFAMILY Protein kinase-like (PK-like) 13 280 IPR011009 -
Lsi01g00124 437 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00124 Lsi02g00916 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00124 Lsi-Chr1:1284522 Lsi05g02172 Lsi-Chr5:28393444 6.39E-178 dispersed
Lsi09g01528 Lsi-Chr9:23368852 Lsi01g00124 Lsi-Chr1:1284522 2.15E-34 dispersed
Lsi11g00402 Lsi-Chr11:4196553 Lsi01g00124 Lsi-Chr1:1284522 4.31E-151 dispersed
Lsi05g01381 Lsi-Chr5:21702250 Lsi01g00124 Lsi-Chr1:1284522 2.61E-131 transposed
Lsi08g01043 Lsi-Chr8:19006299 Lsi01g00124 Lsi-Chr1:1284522 1.83E-115 transposed
Lsi09g00536 Lsi-Chr9:5615035 Lsi01g00124 Lsi-Chr1:1284522 6.45E-40 transposed
Lsi09g01709 Lsi-Chr9:25646845 Lsi01g00124 Lsi-Chr1:1284522 1.84E-49 transposed
Lsi09g01894 Lsi-Chr9:27758725 Lsi01g00124 Lsi-Chr1:1284522 6.45E-78 transposed
Lsi01g00124 Lsi-Chr1:1284522 Lsi02g00916 Lsi-Chr2:8801729 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83229 PF00069 Pkinase 7.50E-75 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00124 - - csv:101214052 808.52