Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00157 ATGAATTCCGTTTTGGCTTTTCTTTCGCCACTGCTTCCGTTTGTGGCCTCTCTTCTGTTTCTCGTCCTCTTTCTTGAGCAGATCTCTTATTTGAAGAAGAAACGCTCTGTTCCTGGTCCTCCTCTTGTTGTCCCCTTCGTCGGCAACGCAATTCCTCTGGTCAGAAACCCTGCTCGTTTCTGGGAAATTCAGGCTTCTTTGGCTAAATCCTCCGGAGTTGGTTTCTCCGTCAACTACATCGCCGGTAACTTCATCGTCTTCATTCGTGACACTGAGCTCTCTCACAAGATTTTCGCCAATGTACGTTCTGACGCTATGAATCTCGTCGGTCATCCCTTCGGGAAGAAGCTATTTGGTGAGGATAATCTGATTTATATGTTGGGGCAAAAGCACAAGGATCTCCGCCGTCGAATCGCTCCTAATTTCACGCCCAAAGCGCTATCCATCTACACCGCACTTCAGCAGATCATCATTCTCAAGCACTTGAAGCTTTGGGATCAGAAGTCGTCGGAATCCTCGCCCAAGCCGATTCCCTTGAGGTATCTGGCTCGAGATCTTAACCTCGAGACTTCTCAGATGGTGTTCGTCGGACCGTATTTAGGCGATAAGGTTCGCGAGAAGTTCAGAGTCGATTACAACATCTTCAATGTCGGCCTGATGAAACTTCCCATCGATTTGCCTGGAACAGGTTTCAGAAACGCGAAACTCGCCGTCGACCGGCTAGTGGAGGTCCTTGCCGACTGTGCAGAGAAGAGCAAAACGAAGATGAAGAGAGAAGAAGAGCCGACGTGTTTGATCGACTTTTGGATGCAGGACACCGTTAAAGAACTCGAGGCTGCAGCAGCGGCCGGCGAGTCAGAGCCCGTTCACACCAGTAACTTTGAGCTCGGCCTGTATCTCTTCGATTTCCTCTTCGCCGCTCAAGACGCTTCCACTTCGTCGCTTCTATGGGCCGTGAGTCTCCTGGACTCGCATCCTGAGGTGGTCGCCAAAGTTCGGGAAGAAGTCAAATCCATCTGGTCGCCGGAATCGGATTCTCTGATCTCAGCTGAGCAGCTACTGGAAATGAAGTACACTCAGGCAGTAGCGCGTGAAGTGGTCCGTTACCGCGCTCCGGCAACGGTTGTGCCACACGTGGCGGCGGAGGAGTTCCCATTGACGGATTCATACACGATCCCAAAAGGCGCAATCGTGTTCCCATCTGCGTACGAGTCGAGTTTCCAGGGTTTCGTTGAACCGGAGCGGTTCGACCCGGAACGGTTCTCGGAGGAAAGGCAAGAGGACCGAATTTTCAAAAGGAACTTTCTGGCATTCGGTGCTGGGTCCCATCAATGTGTTGGGCAACGGTACGCGCTGAACCAACTAGTGCTCTTCATCGCCATGTTTTGTACGTTGCTTGATTTCAAGAGGCACAGATCCGACGGCTGTGATGAAATCGCCTTCAATCCCACCATCTGTCCCAAAGATGACTGCATGGTCTCCATTTCCAGGCGGTGCCCTCGATTTCCCAATCTTTCGCTTGAATAA 1527 51.34 MNSVLAFLSPLLPFVASLLFLVLFLEQISYLKKKRSVPGPPLVVPFVGNAIPLVRNPARFWEIQASLAKSSGVGFSVNYIAGNFIVFIRDTELSHKIFANVRSDAMNLVGHPFGKKLFGEDNLIYMLGQKHKDLRRRIAPNFTPKALSIYTALQQIIILKHLKLWDQKSSESSPKPIPLRYLARDLNLETSQMVFVGPYLGDKVREKFRVDYNIFNVGLMKLPIDLPGTGFRNAKLAVDRLVEVLADCAEKSKTKMKREEEPTCLIDFWMQDTVKELEAAAAAGESEPVHTSNFELGLYLFDFLFAAQDASTSSLLWAVSLLDSHPEVVAKVREEVKSIWSPESDSLISAEQLLEMKYTQAVAREVVRYRAPATVVPHVAAEEFPLTDSYTIPKGAIVFPSAYESSFQGFVEPERFDPERFSEERQEDRIFKRNFLAFGAGSHQCVGQRYALNQLVLFIAMFCTLLDFKRHRSDGCDEIAFNPTICPKDDCMVSISRRCPRFPNLSLE 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1582418 1583944 + Lsi01G001570.1 Lsi01g00157 652815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00157 508 SUPERFAMILY Cytochrome P450 30 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00157 508 Pfam Cytochrome P450 38 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00157 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506|GO:0016705
Lsi01g00157 508 PANTHER CYTOCHROME P450 26 15 495 - -
Lsi01g00157 508 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00157 508 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00157 508 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00157 508 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00157 508 PANTHER CYTOCHROME P450 61 15 495 - -
Lsi01g00157 508 Gene3D Cytochrome P450 28 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00157 508 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00157 508 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00157 508 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00157 508 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00157 Lsi-Chr1:1582418 Lsi02g02017 Lsi-Chr2:26173003 1.96E-25 dispersed
Lsi01g00157 Lsi-Chr1:1582418 Lsi04g01563 Lsi-Chr4:23194296 8.26E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00157 K09832 - csv:101221194 928.702