Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi01g00160 | ATGGTGTTGTGCAAAAGACGTCCGAATAAACGTTTCTTCAAACAACATACTCTTGAGACGCTTCTTCAAACGTTTCGGAAGATTCGTGCGCAGAAGCTGGAGGTGATTTTTGGGGCTTTTTCGCTTTCGCCATTGCCCTGCGCCGTTGTTCTCCCCCTTGGTCTTCCATTGGCGACGCTCGGGCCTGACTCGGTGTTGCCGAGTTTGGACCGGCGGCCCATGAGTTTGGGCCCATGGGCCGGTCCTCTCTCACTCGCCATCTATCTCCGCCGGTTCGTCGACGAAGAAGCAAAGCAGAGGAAAGTTAGGGCCAGGGAAATGGACGCTGGCGAAGAAATTAGGGCAGCTCACAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTCGGGAAAGGGATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATCGCCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGTCCCAGGGTGCTCAGGAATCCCAGCGAGTACATTCAGCCATTCTGCGATGCAGTCACAGAAACTGCTCGCAGTATTGACCCAAAATACCTGAAGGAAGGAGAGCAAGTGTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTCATTGGCTCTATGGATGAAATGCTGAAACTTTACTGTAGGACACTGGAATCACTGAATATAGGTTCTCTCGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATCGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAATATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGATGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTCCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCACCAATATACAGCCCCGAGGACTTGAAGAATATTAAAAAAATAGCGGAAAGAGATGACACATTTGACCTTCTTGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCAGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCTCAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCCGGTGTTGGGTTAACTGCCGCTGTTACATCAGATCAGGAAACAGGAGAAAGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCCCGGTGCAGCGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGTTCATTGACACCAACAAAGAATATAGGTCTTCCAGACTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAACACGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAATGTATGGAAGAGAGGATGAAGCTGAAGCTGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAAACCGAACGTGGTCGGAAGCGTGATACTCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGCGCAGGCATCTGAGCAAATTGCAACAGCATATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGGCAAACTGGAGGAACTCTTCCAATTACTGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCAAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACTAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATAGATGATCCTCCTTCTGAACCTGTACTTGATCAGTCTGCAGAAAGAATAGAAGCATTCAACTCTTTGTTTGGTCAGCACATGCGTGCGAACCATCTGGATGTTATATCTATTGCAGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTAGAGCTGAAATAATGATGCTCTTGCAGTTTCAAAATACGCAGAGACTGCAAGATGATAACAGGAACCAAGAGAGAGAGATCCGTGGCTCCGCAATGGCCTTTCTTTTCCTTCCCAACGCCATCACTTCTTCCTTCTCTCAACGTCTCCATTTTTGTCCTCTCTGCAAATCCCTTCTCGCCGTTTCCTTCCCCTCCAAGAGATTCCGCTCCATTACCATTCTCAACTCCAACAAGATGGAAGAAAATGAAATTACGGAGGAAGTTGCAGAGAAACAAAGCGAGGACAGTTTAAATGTGAAGAGAAAGATTTTTGTGGCCGGTGCATCCGGAAGTACTGGAAAAAGAATTGTGGAGCAATTGCTGGCAAGAGGCTTTGCAGTCAAGGCCGGGGTTCGAGATGTAAGCAAGGCTAAAACTATTCTTTCCCCTGGAAATCCTGCTCTTCAAATTGTAAAAGCGGATGTGACAGAAGGCTCTGCAAAGTTGGCAGAAGCCATAGGTTCTGATTCTGAAGCAGTAATTTGTGCTACGGGCTTTCGCCCAGGATGGGATTTATTTGCGCCATGGAAGGTTGACAATTTTGGCACTGTAAACCTAGTTGAAGCATGCCGTGAGCTGGGCATAAACAGATTTATTCTGATCAGTTCCATTTTAGTCAATGGAGCTGCCATGGGACAGATTCTCAACCCAGCTTATATCTTTTTAAATGTCTTGGGACTCACCTTGATTGCAAAGCTTCAAGCAGAGCAGCACATCAGGAAATCGGGTATCAACTACACAATAATAAGGCCTGGAGGTTTGAAAAATGAGCCTCCCACTGGAAATTTAGTCATGACAGCAGAAGATACTCTTTATGAAGGAAGCATATCAAGAGATTTAGTTGCAGAAGTAGCTGTTGAGGCATTGGTTCTTTCCCAAGCCTCTTACAAGGTTGTCGAAATAGTTTCTCGAGCTGATGCGCCAAAGCGTTCGTATGAGGATCTTTTTGGTTCCATAAAGCAGCGTTAG | 3591 | 44.47 | MVLCKRRPNKRFFKQHTLETLLQTFRKIRAQKLEVIFGAFSLSPLPCAVVLPLGLPLATLGPDSVLPSLDRRPMSLGPWAGPLSLAIYLRRFVDEEAKQRKVRAREMDAGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMDEMLKLYCRTLESLNIGSLVRPKVVKSVHFCPTTGGFTSREYRDITSNIGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSMYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDERRHLSKLQQHMQNLEIQLQMRRQTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDQSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTRAEIMMLLQFQNTQRLQDDNRNQEREIRGSAMAFLFLPNAITSSFSQRLHFCPLCKSLLAVSFPSKRFRSITILNSNKMEENEITEEVAEKQSEDSLNVKRKIFVAGASGSTGKRIVEQLLARGFAVKAGVRDVSKAKTILSPGNPALQIVKADVTEGSAKLAEAIGSDSEAVICATGFRPGWDLFAPWKVDNFGTVNLVEACRELGINRFILISSILVNGAAMGQILNPAYIFLNVLGLTLIAKLQAEQHIRKSGINYTIIRPGGLKNEPPTGNLVMTAEDTLYEGSISRDLVAEVAVEALVLSQASYKVVEIVSRADAPKRSYEDLFGSIKQR | 1196 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 1608017 | 1619869 | - | Lsi01G001600.1 | Lsi01g00160 | 652818 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi01g00160 | 1196 | SMART | mcm | 229 | 756 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lsi01g00160 | 1196 | SMART | AAA_5 | 444 | 597 | IPR003593 | - | |
| Lsi01g00160 | 1196 | CDD | MCM3 | 405 | 754 | - | - | |
| Lsi01g00160 | 1196 | ProSitePatterns | MCM family signature. | 511 | 519 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Lsi01g00160 | 1196 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 962 | 1177 | IPR036291 | - | |
| Lsi01g00160 | 1196 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 571 | 581 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lsi01g00160 | 1196 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 320 | 332 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lsi01g00160 | 1196 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 294 | 308 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lsi01g00160 | 1196 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 604 | 614 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lsi01g00160 | 1196 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 743 | 758 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lsi01g00160 | 1196 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 412 | 768 | IPR027417 | - | |
| Lsi01g00160 | 1196 | CDD | SDR_a5 | 963 | 1178 | - | - | |
| Lsi01g00160 | 1196 | Gene3D | - | 110 | 205 | - | - | |
| Lsi01g00160 | 1196 | Pfam | NAD(P)H-binding | 968 | 1163 | IPR016040 | - | |
| Lsi01g00160 | 1196 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 109 | 886 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lsi01g00160 | 1196 | Pfam | MCM OB domain | 243 | 352 | IPR033762 | - | |
| Lsi01g00160 | 1196 | SUPERFAMILY | Nucleic acid-binding proteins | 119 | 370 | IPR012340 | - | |
| Lsi01g00160 | 1196 | Pfam | MCM N-terminal domain | 118 | 190 | IPR027925 | - | |
| Lsi01g00160 | 1196 | MobiDBLite | consensus disorder prediction | 763 | 815 | - | - | |
| Lsi01g00160 | 1196 | Gene3D | - | 384 | 777 | IPR027417 | - | |
| Lsi01g00160 | 1196 | PANTHER | DNA HELICASE | 109 | 886 | - | - | |
| Lsi01g00160 | 1196 | Pfam | MCM P-loop domain | 390 | 612 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lsi01g00160 | 1196 | Gene3D | - | 292 | 380 | IPR012340 | - | |
| Lsi01g00160 | 1196 | Gene3D | - | 945 | 1185 | - | - | |
| Lsi01g00160 | 1196 | Coils | Coil | 757 | 783 | - | - | |
| Lsi01g00160 | 1196 | ProSiteProfiles | MCM family domain profile. | 402 | 608 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lsi01g00160 | 1196 | Coils | Coil | 682 | 709 | - | - | |
| Lsi01g00160 | 1196 | MobiDBLite | consensus disorder prediction | 763 | 809 | - | - | |
| Lsi01g00160 | 1196 | Pfam | MCM AAA-lid domain | 666 | 752 | IPR041562 | - | |
| Lsi01g00160 | 1196 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 582 | 590 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lsi01g00160 | 1196 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 443 | 458 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lsi01g00160 | 1196 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 555 | 567 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lsi01g00160 | 1196 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 531 | 544 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lsi01g00160 | 1196 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 503 | 517 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00160 | Lsi-Chr1:1608017 | Lsi03g01268 | Lsi-Chr3:23425369 | 3.91E-94 | dispersed | |
| Lsi10g01402 | Lsi-Chr10:18122710 | Lsi01g00160 | Lsi-Chr1:1608017 | 2.26E-09 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi01g00160 | K02541 | - | csv:101210889 | 1361.67 |