Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00165 | ATGTTACCCGTTCAGAAACACTCTCTGGAACCCAACCACCTGCTTGATATGAGTCGAAGAAATCCCACTCGGCGGCTTCGAGTACACAATCAAAACCTGGCTGGCGTCTTTCTCGCCGGTGTTCTCGACTTCCATTTGGAACTCGATCTCCTCGGAGCAAGTCAGGTCGTCCACGAGGGCGGCGGCGCAGTCGGGCTTGAAGGCGTCGTCGTTGTAGGCGATTTCGCGGCATTGAATCGTGTTCCCGAGATCGACGGTGAGGGACCGTTTGGCGACATCGGCGATGGCACGGCCGCCTTCTTCGCCGGGATATCCAACCCAGATAATGGCTTGAATGTTGGGATTATTCTTAGCGAAAGAGATGTCGATTCCGCCGGCGGACAAGATGACAAGAGCAACTGGGCCCTTAGAGACAGTTGCAACTTGTTGGATGAGTTGAGTTTGGTAACCAGGAAGAAGAAGATCAACTCTGTCCAAGCTCTCTGCTTCAATGGACAAATCAATACCAGCAAAAATCACAGTTGCATCAGAGTTCCTGGCTGCATCCATGGCTCCAAATATGAAGGTATCTTGCCAAGCATGACAGAAGTGGCATTGGCATGGGGTCCAACAACAGCTAGGGTTTTGATAGTAGAAGGATCAAGAGGCAAAATGTCATTATGGTTCTTGAGCAAAACAGTTCCTTCCCTAGCTGCTTCAGTGGCCAACTCAATGTGTTCATCAGAGCAAATATCTTGTTTTCCAAGTGATTCGAAACCAGGGCTTCCATCAAAGAACCCAAGTCTCATTAGAACAACATACCAATTGCCTCTAATGGTGTTCTTTAAGAGAACTGGATCAGCACAGCATCAAAACTGTAACGATCAACACCGAGCCAATTGTCAACATCATAAGCAGCATAGTGCTTGCAACAGGAAGAAACCTTTAGAGACCTCTAACATAGTTCTTAGCATATTTGCCAACAACGAAAGGGTCTTCACCGGGGGTTTCCAGGATTCGTCCCCATCTCGGGTCTCGAACCACATTGATGTTTGGACTCCAGTCAAAAGTTCTAAACTTTACCTGCCCAATTCTTTTCCAAAGAGCTTCATTGAAAGAAGCTGCAGTGGTAATGACATTGGGGAAGCTTGTGGCGCCAGGCACAACTTCGTCAAACCAGGTACCGGGGCCGACATTGGAGACACCATGGAGAGCCTCAGACCACCAATTGTATGGTGGCAAGCCAAGGCGGTCTACTCCAGCAGCACGTGGGCCTATCGTGACCCAACAAGGCCCAGAAGGGGAGGCAACCAAAACCAACACCGACGCCGAGCTTTGACCAATGGCTTTGATTCTTCATCTGTAAACTGCAAAACCCAAGGTCGAAGAGAAATGGCGGGACTCGGAAGACTGGCGCAATTGAAACCCATAGCTGAAGAAGCATTGGCCGGAACAGTTTTCGTGGCGAAGTTCCTTTGTGGCCTTCATGTCGCCAACACTTACATCTGCACAGCCGCTCTCACCTACGGTCCCAGCATGCTCCCTACTCTGAACCTAACCGGCGATTTCATCTTGGCCGAACGACTCTCCACTCGCTTTGGCAGAGTCGGCGTCGGAGACATTGTCCTCTTGAGGTCTCCTGAGAACCCTCGTAAAGTAATGGCGAAGCGCTTGATGGGCATGGAAGGTGATTCTGTTACCTATATTGTAGACCCGAAGAACAGTGATTGGAGCGAAACTGTTGTGGTTCCTAAGGGGCATGTTTGGATAGAGGGAGATAATATCTATGATTCAAATGATTCGAGAAATTTTGGGGCCGTTCCATATGGTCTTCTGCAAGGGAAAATATTTTGGAGGATATGGCCACCTAGAAGTTTTGGACCTTTGGAGAAGAGAAAATCAATCGAGACCGTCTTGTGA | 1899 | 49.08 | MLPVQKHSLEPNHLLDMSRRNPTRRLRVHNQNLAGVFLAGVLDFHLELDLLGASQVVHEGGGAVGLEGVVVVGDFAALNRVPEIDGEGPFGDIGDGTAAFFAGISNPDNGLNVGIILSERDVDSAGGQDDKSNWALRDSCNLLDELSLVTRKKKINSVQALCFNGQINTSKNHSCIRVPGCIHGSKYEGILPSMTEVALAWGPTTARVLIVEGSRGKMSLWFLSKTVPSLAASVANSMCSSEQISCFPSDSKPGLPSKNPSLIRTTYQLPLMVFFKRTGSAQHQNCNDQHRANCQHHKQHSACNRKKPLETSNIVLSIFANNERVFTGGFQDSSPSRVSNHIDVWTPVKSSKLYLPNSFPKSFIERSCSGNDIGEACGARHNFVKPGTGADIGDTMESLRPPIVWWQAKAVYSSSTWAYRDPTRPRRGGNQNQHRRRALTNGFDSSSVNCKTQGRREMAGLGRLAQLKPIAEEALAGTVFVAKFLCGLHVANTYICTAALTYGPSMLPTLNLTGDFILAERLSTRFGRVGVGDIVLLRSPENPRKVMAKRLMGMEGDSVTYIVDPKNSDWSETVVVPKGHVWIEGDNIYDSNDSRNFGAVPYGLLQGKIFWRIWPPRSFGPLEKRKSIETVL | 632 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1644236 | 1652973 | - | Lsi01G001650.1 | Lsi01g00165 | 652823 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00165 | 632 | PANTHER | PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED | 463 | 625 | - | - | |
Lsi01g00165 | 632 | PANTHER | PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN | 463 | 625 | - | - | |
Lsi01g00165 | 632 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 576 | 595 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
Lsi01g00165 | 632 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 494 | 510 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
Lsi01g00165 | 632 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 547 | 559 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
Lsi01g00165 | 632 | Gene3D | Umud Fragment, subunit A | 491 | 626 | - | - | |
Lsi01g00165 | 632 | SUPERFAMILY | LexA/Signal peptidase | 493 | 622 | IPR036286 | - | |
Lsi01g00165 | 632 | Pfam | Signal peptidase, peptidase S26 | 488 | 561 | IPR019533 | GO:0004252|GO:0006465 | |
Lsi01g00165 | 632 | Pfam | Signal peptidase, peptidase S26 | 570 | 614 | IPR019533 | GO:0004252|GO:0006465 | |
Lsi01g00165 | 632 | CDD | S26_SPase_I | 503 | 609 | IPR019533 | GO:0004252|GO:0006465 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00165 | Lsi-Chr1:1644236 | Lsi07g00867 | Lsi-Chr7:9820017 | 3.51E-49 | dispersed | |
Lsi01g00165 | Lsi-Chr1:1644236 | Lsi04g01599 | Lsi-Chr4:23525241 | 1.41E-12 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00165 | K09647 | - | csv:101209167 | 320.087 |