Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00165 ATGTTACCCGTTCAGAAACACTCTCTGGAACCCAACCACCTGCTTGATATGAGTCGAAGAAATCCCACTCGGCGGCTTCGAGTACACAATCAAAACCTGGCTGGCGTCTTTCTCGCCGGTGTTCTCGACTTCCATTTGGAACTCGATCTCCTCGGAGCAAGTCAGGTCGTCCACGAGGGCGGCGGCGCAGTCGGGCTTGAAGGCGTCGTCGTTGTAGGCGATTTCGCGGCATTGAATCGTGTTCCCGAGATCGACGGTGAGGGACCGTTTGGCGACATCGGCGATGGCACGGCCGCCTTCTTCGCCGGGATATCCAACCCAGATAATGGCTTGAATGTTGGGATTATTCTTAGCGAAAGAGATGTCGATTCCGCCGGCGGACAAGATGACAAGAGCAACTGGGCCCTTAGAGACAGTTGCAACTTGTTGGATGAGTTGAGTTTGGTAACCAGGAAGAAGAAGATCAACTCTGTCCAAGCTCTCTGCTTCAATGGACAAATCAATACCAGCAAAAATCACAGTTGCATCAGAGTTCCTGGCTGCATCCATGGCTCCAAATATGAAGGTATCTTGCCAAGCATGACAGAAGTGGCATTGGCATGGGGTCCAACAACAGCTAGGGTTTTGATAGTAGAAGGATCAAGAGGCAAAATGTCATTATGGTTCTTGAGCAAAACAGTTCCTTCCCTAGCTGCTTCAGTGGCCAACTCAATGTGTTCATCAGAGCAAATATCTTGTTTTCCAAGTGATTCGAAACCAGGGCTTCCATCAAAGAACCCAAGTCTCATTAGAACAACATACCAATTGCCTCTAATGGTGTTCTTTAAGAGAACTGGATCAGCACAGCATCAAAACTGTAACGATCAACACCGAGCCAATTGTCAACATCATAAGCAGCATAGTGCTTGCAACAGGAAGAAACCTTTAGAGACCTCTAACATAGTTCTTAGCATATTTGCCAACAACGAAAGGGTCTTCACCGGGGGTTTCCAGGATTCGTCCCCATCTCGGGTCTCGAACCACATTGATGTTTGGACTCCAGTCAAAAGTTCTAAACTTTACCTGCCCAATTCTTTTCCAAAGAGCTTCATTGAAAGAAGCTGCAGTGGTAATGACATTGGGGAAGCTTGTGGCGCCAGGCACAACTTCGTCAAACCAGGTACCGGGGCCGACATTGGAGACACCATGGAGAGCCTCAGACCACCAATTGTATGGTGGCAAGCCAAGGCGGTCTACTCCAGCAGCACGTGGGCCTATCGTGACCCAACAAGGCCCAGAAGGGGAGGCAACCAAAACCAACACCGACGCCGAGCTTTGACCAATGGCTTTGATTCTTCATCTGTAAACTGCAAAACCCAAGGTCGAAGAGAAATGGCGGGACTCGGAAGACTGGCGCAATTGAAACCCATAGCTGAAGAAGCATTGGCCGGAACAGTTTTCGTGGCGAAGTTCCTTTGTGGCCTTCATGTCGCCAACACTTACATCTGCACAGCCGCTCTCACCTACGGTCCCAGCATGCTCCCTACTCTGAACCTAACCGGCGATTTCATCTTGGCCGAACGACTCTCCACTCGCTTTGGCAGAGTCGGCGTCGGAGACATTGTCCTCTTGAGGTCTCCTGAGAACCCTCGTAAAGTAATGGCGAAGCGCTTGATGGGCATGGAAGGTGATTCTGTTACCTATATTGTAGACCCGAAGAACAGTGATTGGAGCGAAACTGTTGTGGTTCCTAAGGGGCATGTTTGGATAGAGGGAGATAATATCTATGATTCAAATGATTCGAGAAATTTTGGGGCCGTTCCATATGGTCTTCTGCAAGGGAAAATATTTTGGAGGATATGGCCACCTAGAAGTTTTGGACCTTTGGAGAAGAGAAAATCAATCGAGACCGTCTTGTGA 1899 49.08 MLPVQKHSLEPNHLLDMSRRNPTRRLRVHNQNLAGVFLAGVLDFHLELDLLGASQVVHEGGGAVGLEGVVVVGDFAALNRVPEIDGEGPFGDIGDGTAAFFAGISNPDNGLNVGIILSERDVDSAGGQDDKSNWALRDSCNLLDELSLVTRKKKINSVQALCFNGQINTSKNHSCIRVPGCIHGSKYEGILPSMTEVALAWGPTTARVLIVEGSRGKMSLWFLSKTVPSLAASVANSMCSSEQISCFPSDSKPGLPSKNPSLIRTTYQLPLMVFFKRTGSAQHQNCNDQHRANCQHHKQHSACNRKKPLETSNIVLSIFANNERVFTGGFQDSSPSRVSNHIDVWTPVKSSKLYLPNSFPKSFIERSCSGNDIGEACGARHNFVKPGTGADIGDTMESLRPPIVWWQAKAVYSSSTWAYRDPTRPRRGGNQNQHRRRALTNGFDSSSVNCKTQGRREMAGLGRLAQLKPIAEEALAGTVFVAKFLCGLHVANTYICTAALTYGPSMLPTLNLTGDFILAERLSTRFGRVGVGDIVLLRSPENPRKVMAKRLMGMEGDSVTYIVDPKNSDWSETVVVPKGHVWIEGDNIYDSNDSRNFGAVPYGLLQGKIFWRIWPPRSFGPLEKRKSIETVL 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1644236 1652973 - Lsi01G001650.1 Lsi01g00165 652823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00165 632 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 463 625 - -
Lsi01g00165 632 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 463 625 - -
Lsi01g00165 632 PRINTS Bacterial leader peptidase 1 (S26A) family signature 576 595 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lsi01g00165 632 PRINTS Bacterial leader peptidase 1 (S26A) family signature 494 510 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lsi01g00165 632 PRINTS Bacterial leader peptidase 1 (S26A) family signature 547 559 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lsi01g00165 632 Gene3D Umud Fragment, subunit A 491 626 - -
Lsi01g00165 632 SUPERFAMILY LexA/Signal peptidase 493 622 IPR036286 -
Lsi01g00165 632 Pfam Signal peptidase, peptidase S26 488 561 IPR019533 GO:0004252|GO:0006465
Lsi01g00165 632 Pfam Signal peptidase, peptidase S26 570 614 IPR019533 GO:0004252|GO:0006465
Lsi01g00165 632 CDD S26_SPase_I 503 609 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00165 Lsi-Chr1:1644236 Lsi07g00867 Lsi-Chr7:9820017 3.51E-49 dispersed
Lsi01g00165 Lsi-Chr1:1644236 Lsi04g01599 Lsi-Chr4:23525241 1.41E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00165 K09647 - csv:101209167 320.087