Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00170 ATGGCTTCTAGCGTCAGTTTAGCCATTTTAGTGATAGCTAGTTTTTTTCTAGTTAGGGTTCTCTTTGCCCAACACCAATCTGCCATGGAAGTTGAATTGGAAGCCTTAAAGGCCTTCAAGAGTTGCATCCATTTCGATCCATTGGGAGCACTTGCGGATTGGACGGACCTTAATCACCACTGCAATTGGTCTGGTATTATATGCGACTCTGTTTCCAAAAGGGTCATGTCGATTACTTTGATTGATCAGCAGCTTGAAGGCGAGATTTCTCCATTTATTGGCAACCTCTCAGCTCTCCAGGTTCTTGATTTAACTCAGAATTCGTTTACCGGGCAGATTCCAGGTGAATTGGGTTTGTGTTCCAACCTTTCTCAGCTCACTCTTTACAGAAACTTTCTTTCAGGTCACGTTCCACCCCAGTTGGGAAACCTTGCGTTCCTGCAATATGTTGATTTGGGAAATAACTTCTTAAAGGGAAGCATTCCTGATAGCATTTGCAATTGCACAAACTTGTTAGCATTTGGTGTGATATTTAATAATCTCACGGGCAGAATCCCATTGAACATAGGAAGCTTAGTCAATCTTCAAATTCTGGTTGCATACGCCAACAAGCTAGAAGGTTCCATTCCCATCTCTATTGGCAAATTAGATGCACTGCAAACTCTAGATCTTAGCCAGAACAACTTGTCTGGGAATATACCAATGGAGATTGGGAATTTGTTGAATTTGGAGTATCTCTCATTGTTTGAGAATGCTTTGGTTGGGAAAATTCCGGAGGAGATAGGTAAATGTGAGAAGCTTCTTTCTTTGGAACTATACAACAATAAGTTCAGTGGTCCAATTCCTTCACAATTAGGCTCTCTGGCTCACTTACAAACCTTGCGTCTGTATACAAATAGATTAAATTCCACTATACCACAATCTCTCTTACAGTTGGAAGGTTTAACTCATTTGCTTCTCTCAGAGAACGAGTTAAGTGGAACTATATCTTCTGATATTGGATCTTTGAGATCATTGCAGGTTTTGACTCTTCACTCGAATAGATTTTTTGGGGTGATTCCTTTGTCTTTGACAAACTTGTCAAACCTAACACATTTGTCTCTGAGCTTCAATTTTTTCACAGGTGAGATTCCATCCAATTTAGGTCTGCTTTATAATCTGAAGAGATTGACATTGAGCAGTAATCTCCTAGCAGGTTCAATTCCATCTAGTATTACCAATTGCACCCAGCTTTCTATAATTGATCTTTCATTCAATAGACTGACTGGGAAAATACCTATGGGATACGGGAAGTTGCAGAATCTTACTTCCCTCTTGCTTGGATCAAATAGGATTTTTGGTGAAATCCCAGATGACTTATTCAATTGCTCATCCCTTGAGGTCGTAGACCTGGCTCTAAACAACTTCACTGGATTGTTAAAATCCAGTATTGGCAAGCTTTCCAATATTCGAGTTTTCAGAGCCGCATCAAATTCATTTTCTGGGGAAATTCCAGGGGACATTGGCAACTTAAGCAGACTCAACACATTAGTACTTGCAGAAAATAAATTCTCAGGTCAAATTCCTGGGGAGTTGTCAAAGCTTTCTCTTCTTCAAGCTCTTTCTTTGCATGACAATGCATTGGAAGGAAGGATTCCTGAAAAAATATTTGATTTGAAACAACTGGTTCATCTTCATTTGCAGAACAACAAGTTCATTGGTCCAATTCCAGATGCCATCTCAAGACTAGAGTTCCTTTCATATTTGGACCTTCATGGAAACATGCTTAATGGACCGGTTCCTAAAAGTATGAGGAATCTTCATCGACTTGTGATGTTAGATCTGTCCCACAACCATCTATCTGGATCAATTCCTGGGGTTTTAATCTCAGGTATGAAAGATATGCAACTATACCTGAACTTGTCATACAATTTACTGGTAGGAGGTATTCCAGCTGAGCTTGGGTTGTTGCAAATGATACAATCCATTGACTTCTCAAACAACAATCTCACTGGGATTATTCCAGCAACGATCGGAGGTTGTAGAAATTTGTTCTTTCTTGATCTGTCAGGAAATGATCTTTCCGGTATGCTTCCAGGTAGAGCTTTTACTGGAATGAATATGCTCACGAACTTGAACCTTTCAAGGAACAAAATAGCTGGTGAAATCCCAGAAGAGTTAGCAAATCTGGAGCACTTGTACTACTTGGACCTTTCTCAGAACCAGTTCAGTGGCAGAATCTCTCAAAAACTTTCATCTCTGAAGTATGTTAACCTTTCCTTTAATCAACTAGAAGGTCCTGTTCCAGACACCGGAATATTTCAAAAAATAAATGCTTCAAGCTTGATAGGAAATCCTGCTCTTTGTGGATTCAATTCCTTCGCTCCTTGTGGAAAGAAGTATTTGCGACATCTATCAAAAAAGACCTTACTAATTCTCATAACCCTTGGATCTATTATTGTACTCTTAGCTATAATTTTCTTAATTCTAGGCCTCAACCGATATCGTAAGCTTGAGAAATCTAAAAGTATTGAGAATCCTGAACCATCATTGGGGTATGCATGTACCCTTAAGAGGTTTGATAAGAAGGATATGGAGATTGCAACAGAATACTTCAGCGATGAAAACATTCTAGGTTCCAGTACTTTAAGCACTGTCTACAGGGGTCAGCTGGACGATGGACAGATTGTAGCTGTAAAAAGATTGAATTTGCAATATTTTTCTACAGAATCAGATGATTACTTCGGTAGAGAAATCAAGATTCTTTGTCAACTTAGACATAGGAATTTGGTGAAAGTACTCGGATATGCTTGGGAAAGCCAGAGGCTGAAGGCTATCGTTCTTGAATACATGGAAAATGGGAACTTGGATAGAATAATACATAACCCTGGAACAGATCAAATGAGTTGTTCATTGTCAAAGAGGGTTGATATTTGTGTTTCTGTTGCTAGTGGGATGCAATACCTGCATCATGGATATGATTTTCCCATCATTCACTGCGACTTGAAACCTTCAAACATCCTTCTTGATGGAGACTGGATAGCCCATGTGAGCGATTTTGGAACTGCTAGAGTGTTGGGGGTGCAAAGCCGAGACACAAGCAGCATCTCCTCTTCAGCAGCTTTTGAAGGCACGATCGGATATTTGGCTCCAGAGTTTGCATACATGGGGAAAGTGACAACAAAAGTAGATGTGTTCAGTTTTGGTGTAATACTGATGGAACTTCTGACAAAGAAAAGGCCAACTGCCACCATTGAAACTCATGGACACCCAACCAGCTTGCAGCAACTGGTAGAGAGAGCTCTAGTAAATGGAAAGGAAGAACTTGGTCAAATTTTGGATCCTGTGCTGGTCTTGAATGATTCAAAGGAGCAAAAGAGGTTAGAGAAACTGCTCAAACTAGCACTCAGCTGTACCAACCAAAATCCTGAGAATAGACCTGACATGAACGAAGTTCTATCTATCCTCATGAAGCTGTAG 3459 39.98 MASSVSLAILVIASFFLVRVLFAQHQSAMEVELEALKAFKSCIHFDPLGALADWTDLNHHCNWSGIICDSVSKRVMSITLIDQQLEGEISPFIGNLSALQVLDLTQNSFTGQIPGELGLCSNLSQLTLYRNFLSGHVPPQLGNLAFLQYVDLGNNFLKGSIPDSICNCTNLLAFGVIFNNLTGRIPLNIGSLVNLQILVAYANKLEGSIPISIGKLDALQTLDLSQNNLSGNIPMEIGNLLNLEYLSLFENALVGKIPEEIGKCEKLLSLELYNNKFSGPIPSQLGSLAHLQTLRLYTNRLNSTIPQSLLQLEGLTHLLLSENELSGTISSDIGSLRSLQVLTLHSNRFFGVIPLSLTNLSNLTHLSLSFNFFTGEIPSNLGLLYNLKRLTLSSNLLAGSIPSSITNCTQLSIIDLSFNRLTGKIPMGYGKLQNLTSLLLGSNRIFGEIPDDLFNCSSLEVVDLALNNFTGLLKSSIGKLSNIRVFRAASNSFSGEIPGDIGNLSRLNTLVLAENKFSGQIPGELSKLSLLQALSLHDNALEGRIPEKIFDLKQLVHLHLQNNKFIGPIPDAISRLEFLSYLDLHGNMLNGPVPKSMRNLHRLVMLDLSHNHLSGSIPGVLISGMKDMQLYLNLSYNLLVGGIPAELGLLQMIQSIDFSNNNLTGIIPATIGGCRNLFFLDLSGNDLSGMLPGRAFTGMNMLTNLNLSRNKIAGEIPEELANLEHLYYLDLSQNQFSGRISQKLSSLKYVNLSFNQLEGPVPDTGIFQKINASSLIGNPALCGFNSFAPCGKKYLRHLSKKTLLILITLGSIIVLLAIIFLILGLNRYRKLEKSKSIENPEPSLGYACTLKRFDKKDMEIATEYFSDENILGSSTLSTVYRGQLDDGQIVAVKRLNLQYFSTESDDYFGREIKILCQLRHRNLVKVLGYAWESQRLKAIVLEYMENGNLDRIIHNPGTDQMSCSLSKRVDICVSVASGMQYLHHGYDFPIIHCDLKPSNILLDGDWIAHVSDFGTARVLGVQSRDTSSISSSAAFEGTIGYLAPEFAYMGKVTTKVDVFSFGVILMELLTKKRPTATIETHGHPTSLQQLVERALVNGKEELGQILDPVLVLNDSKEQKRLEKLLKLALSCTNQNPENRPDMNEVLSILMKL 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1664312 1668022 + Lsi01G001700.1 Lsi01g00170 652828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00170 1152 Pfam Protein kinase domain 866 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00170 1152 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Lsi01g00170 1152 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 10 296 - -
Lsi01g00170 1152 PRINTS Leucine-rich repeat signature 219 232 - -
Lsi01g00170 1152 PRINTS Leucine-rich repeat signature 600 613 - -
Lsi01g00170 1152 Gene3D Phosphorylase Kinase; domain 1 828 943 - -
Lsi01g00170 1152 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515
Lsi01g00170 1152 Pfam Leucine rich repeat 691 736 IPR001611 GO:0005515
Lsi01g00170 1152 Pfam Leucine rich repeat 632 687 IPR001611 GO:0005515
Lsi01g00170 1152 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 366 1150 - -
Lsi01g00170 1152 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 366 1150 - -
Lsi01g00170 1152 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 288 379 - -
Lsi01g00170 1152 CDD STKc_IRAK 871 1152 - -
Lsi01g00170 1152 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Lsi01g00170 1152 ProSitePatterns Serine/Threonine protein kinases active-site signature. 990 1002 IPR008271 GO:0004672|GO:0006468
Lsi01g00170 1152 SMART serkin_6 865 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00170 1152 Gene3D Transferase(Phosphotransferase) domain 1 944 1152 - -
Lsi01g00170 1152 SMART LRR_typ_2 600 624 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 699 723 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 650 673 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 674 698 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 144 168 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 744 769 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 288 312 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 336 359 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 528 552 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 432 456 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 360 383 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 240 264 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 96 120 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 216 239 IPR003591 -
Lsi01g00170 1152 SMART LRR_typ_2 384 408 IPR003591 -
Lsi01g00170 1152 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515
Lsi01g00170 1152 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 288 379 - -
Lsi01g00170 1152 Gene3D Ribonuclease Inhibitor 522 630 IPR032675 -
Lsi01g00170 1152 Gene3D Ribonuclease Inhibitor 430 521 IPR032675 -
Lsi01g00170 1152 ProSiteProfiles Protein kinase domain profile. 865 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00170 1152 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 296 - -
Lsi01g00170 1152 SUPERFAMILY L domain-like 546 789 - -
Lsi01g00170 1152 SUPERFAMILY L domain-like 32 310 - -
Lsi01g00170 1152 Gene3D Ribonuclease Inhibitor 179 238 IPR032675 -
Lsi01g00170 1152 SUPERFAMILY Protein kinase-like (PK-like) 842 1149 IPR011009 -
Lsi01g00170 1152 Gene3D Ribonuclease Inhibitor 631 797 IPR032675 -
Lsi01g00170 1152 Gene3D Ribonuclease Inhibitor 239 324 IPR032675 -
Lsi01g00170 1152 Gene3D Ribonuclease Inhibitor 325 429 IPR032675 -
Lsi01g00170 1152 SUPERFAMILY RNI-like 282 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00170 Lsi-Chr1:1664312 Lsi02g00532 Lsi-Chr2:4619376 0 dispersed
Lsi06g00393 Lsi-Chr6:4318611 Lsi01g00170 Lsi-Chr1:1664312 2.15E-90 dispersed
Lsi06g00725 Lsi-Chr6:12193600 Lsi01g00170 Lsi-Chr1:1664312 5.73E-40 dispersed
Lsi01g00170 Lsi-Chr1:1664312 Lsi05g01810 Lsi-Chr5:25345800 1.33E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83230 PF00069 Pkinase 6.90E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00170 K13420 - csv:101215973 1962.96