Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00172 ATGGCTGCCTCTACAATGGCTCTCTCCTCCCCATCTCTGGCTGGCAAGGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGCCAGCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCATCCTACCTCACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGTTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCTGTATGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGACTCGACTACTTGGGGAACCCAAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCACTCGGGGAGATCACTGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAGGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTGTTCCCGGAAAGTGA 798 55.76 MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1668479 1669276 - Lsi01G001720.1 Lsi01g00172 652830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00172 265 MobiDBLite consensus disorder prediction 23 46 - -
Lsi01g00172 265 MobiDBLite consensus disorder prediction 1 46 - -
Lsi01g00172 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 265 - -
Lsi01g00172 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Lsi01g00172 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Lsi01g00172 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Lsi01g00172 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00172 Lsi-Chr1:1668479 Lsi02g00880 Lsi-Chr2:8319931 5.54E-176 dispersed
Lsi01g00172 Lsi-Chr1:1668479 Lsi01g00173 Lsi-Chr1:1671452 0 tandem
Lsi01g01533 Lsi-Chr1:13449776 Lsi01g00172 Lsi-Chr1:1668479 4.83E-31 transposed
Lsi03g01151 Lsi-Chr3:21810160 Lsi01g00172 Lsi-Chr1:1668479 6.24E-174 transposed
Lsi04g02433 Lsi-Chr4:31387743 Lsi01g00172 Lsi-Chr1:1668479 5.72E-10 transposed
Lsi05g00685 Lsi-Chr5:9123085 Lsi01g00172 Lsi-Chr1:1668479 5.64E-119 transposed
Lsi11g01355 Lsi-Chr11:22168602 Lsi01g00172 Lsi-Chr1:1668479 1.48E-150 transposed
Lsi01g00172 Lsi-Chr1:1668479 Lsi10g01537 Lsi-Chr10:19772142 0 wgd
Lsi01g00172 Lsi-Chr1:1668479 Lsi02g00878 Lsi-Chr2:8302534 7.59E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00172 K08912 - cpap:110819729 530.791